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Package 86/251HostnameOS / ArchBUILDCHECKBUILD BIN
GeneRfold 0.1.3
Antoine Lucas
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneRfold
Last Changed Rev: 28108 / Revision: 29143
Last Changed Date: 2007-10-21 09:10:13 -0700 (Sun, 21 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64  ERROR  skipped  skipped 
Package: GeneRfold
Version: 0.1.3
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build GeneRfold
StartedAt: 2007-12-11 04:00:29 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:00:41 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 11.8 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GeneRfold/DESCRIPTION' ... OK
* preparing 'GeneRfold':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* checking whether 'INDEX' is up-to-date ... OK
* installing the package to re-build vignettes
/tmp/Rinst31739993
* Installing *source* package 'GeneRfold' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include/  -fPIC -Wno-conversion -I/usr/local/include    -fpic  -g -O2 -Wall -c viennaR.c -o viennaR.o
gcc -std=gnu99 -shared -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** inst
** help
 >>> Building/Updating help pages for package 'GeneRfold'
     Formats: text html latex example 
  fold                              text    html    latex   example
  rnaplot                           text    html    latex   example
** building package indices ...
* DONE (GeneRfold)
* creating vignettes ... ERROR
Loading required package: GeneR

Error: processing vignette 'GeneRfold.Rnw' failed with diagnostics:
 chunk 1 
Error : package 'GeneR' could not be loaded
In addition: Warning message:
In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  there is no package called 'GeneR'
Execution halted