Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 82/251HostnameOS / ArchBUILDCHECKBUILD BIN
GeneMeta 1.11.0
Biocore Team c/o BioC user list
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneMeta
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: GeneMeta
Version: 1.11.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check GeneMeta_1.11.0.tar.gz
StartedAt: 2007-12-11 06:06:30 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:12:10 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 339.8 seconds
RetCode: 0
Status: OK
CheckDir: GeneMeta.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/GeneMeta.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'GeneMeta/DESCRIPTION' ... OK
* this is package 'GeneMeta' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneMeta' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating GeneMeta-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './GeneMeta.tex' ...
Package natbib Warning: Citation `Choi.2003' on page 1 undefined on input line 
Package natbib Warning: Citation `Choi.2003' on page 1 undefined on input line 
Package natbib Warning: Citation `Choi.2003' on page 1 undefined on input line 
Package natbib Warning: Citation `West.2001' on page 2 undefined on input line 
Package natbib Warning: Citation `Choi.2003' on page 8 undefined on input line 
Package natbib Warning: Citation `Choi.2003' on page 10 undefined on input line
Package natbib Warning: Citation `Choi.2003' on page 11 undefined on input line
Package natbib Warning: Citation `Tusher.2001' on page 11 undefined on input li
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './GeneMeta.tex' ...
* creating GeneMeta-manual.tex ... OK
* checking GeneMeta-manual.tex ... OK

GeneMeta.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/GeneMeta.Rcheck
* Installing *source* package 'GeneMeta' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \examples
Note: removing empty section \value
Note: removing empty section \details
 >>> Building/Updating help pages for package 'GeneMeta'
     Formats: text html latex example 
  CountPlot                         text    html    latex
  Nevins                            text    html    latex   example
  dstar                             text    html    latex   example
  f.Q                               text    html    latex   example
  tau                               text    html    latex   example
  zscore                            text    html    latex   example
** building package indices ...
* DONE (GeneMeta)