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Package 19/251HostnameOS / ArchBUILDCHECKBUILD BIN
AnnotationDbi 1.1.6
Biocore Team c/o BioC user list
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AnnotationDbi
Last Changed Rev: 28265 / Revision: 29143
Last Changed Date: 2007-10-26 16:05:50 -0700 (Fri, 26 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
wellington Linux (openSUSE 10.3) / i686  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  WARNINGS  OK 
Package: AnnotationDbi
Version: 1.1.6
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check AnnotationDbi_1.1.6.tar.gz
StartedAt: 2007-12-11 04:13:56 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:18:09 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 253.5 seconds
RetCode: 0
Status: WARNINGS
CheckDir: AnnotationDbi.Rcheck
Warnings: 1

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/AnnotationDbi.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'AnnotationDbi/DESCRIPTION' ... OK
* this is package 'AnnotationDbi' version '1.1.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AnnotationDbi' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Rd files without 'description':
  BimapFormatting.Rd
These entries are required in an Rd file.

See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating AnnotationDbi-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating AnnotationDbi-manual.tex ... OK
* checking AnnotationDbi-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.2-bioc/meat/AnnotationDbi.Rcheck/00check.log
for details

AnnotationDbi.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/AnnotationDbi.Rcheck


---------- Making package AnnotationDbi ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package AnnotationDbi for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RSQLite
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
  installing man source files
  installing indices
  installing help
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \value
Note: removing empty section \description
Note: removing empty section \value
Note: removing empty section \description
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
 >>> Building/Updating help pages for package 'AnnotationDbi'
     Formats: text html latex example chm 
  AnnDbBimap-envirAPI               text    html    latex   example chm
  AnnDbObj-class                    text    html    latex   example chm
  AnnDbPkg-checker                  text    html    latex   example chm
  AnnDbPkg-maker                    text    html    latex   example chm
  AnnotationDbi-internals           text    html    latex           chm
  Bimap-colmethods                  text    html    latex   example chm
  Bimap-direction                   text    html    latex   example chm
  Bimap-keymethods                  text    html    latex   example chm
  Bimap-toTable                     text    html    latex   example chm
  Bimap                             text    html    latex   example chm
  BimapFormatting                   text    html    latex   example chm
  GOTerms-class                     text    html    latex   example chm
  make_eg_to_go_map                 text    html    latex   example chm
  toSQLStringSet                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\AnnotationDbi.Rcheck\00_pkg_src\AnnotationDbi\chm\AnnotationDbi.chm


Compile time: 0 minutes, 1 second
15	Topics
307	Local links
1	Internet link
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\AnnotationDbi.Rcheck\00_pkg_src\AnnotationDbi\chm\AnnotationDbi.chm, 44,014 bytes
Compression decreased file by 93,338 bytes.
  adding MD5 sums

* DONE (AnnotationDbi)