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BioC experimental data: CHECK report for waveTilingData on moscato2

This page was generated on 2014-10-04 17:41:49 -0700 (Sat, 04 Oct 2014).

Package 190/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waveTilingData 1.0.0
Kristof De Beuf
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/waveTilingData
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: waveTilingData
Version: 1.0.0
Command: rm -rf waveTilingData.buildbin-libdir && mkdir waveTilingData.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=waveTilingData.buildbin-libdir waveTilingData_1.0.0.tar.gz >waveTilingData-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=waveTilingData.buildbin-libdir --install="check:waveTilingData-install.out" --force-multiarch --no-vignettes --timings waveTilingData_1.0.0.tar.gz
StartedAt: 2014-10-04 11:09:32 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 11:16:03 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 392.0 seconds
RetCode: 0
Status:  OK  
CheckDir: waveTilingData.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf waveTilingData.buildbin-libdir && mkdir waveTilingData.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=waveTilingData.buildbin-libdir waveTilingData_1.0.0.tar.gz >waveTilingData-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=waveTilingData.buildbin-libdir --install="check:waveTilingData-install.out" --force-multiarch --no-vignettes --timings waveTilingData_1.0.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/waveTilingData.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'waveTilingData/DESCRIPTION' ... OK
* this is package 'waveTilingData' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'waveTilingData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 240.8Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  Calls: <Anonymous> ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [77s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
leafdev                  40.38   0.28   40.70
leafdevBQ                21.98   0.37   22.45
leafdevMapAndFilterTAIR9 10.24   0.06   10.30
** running examples for arch 'x64' ... [79s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
leafdev                  42.16   0.41   42.56
leafdevBQ                20.70   0.53   21.25
leafdevMapAndFilterTAIR9  9.03   0.11    9.14
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/waveTilingData.Rcheck/00check.log'
for details.

waveTilingData.Rcheck/00install.out:


install for i386

* installing *source* package 'waveTilingData' ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'waveTilingData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'waveTilingData' as waveTilingData_1.0.0.zip
* DONE (waveTilingData)

waveTilingData.Rcheck/examples_i386/waveTilingData-Ex.timings:

nameusersystemelapsed
leafdev40.38 0.2840.70
leafdevBQ21.98 0.3722.45
leafdevFit0.880.030.91
leafdevInfCompare0.870.040.90
leafdevMapAndFilterTAIR910.24 0.0610.30

waveTilingData.Rcheck/examples_x64/waveTilingData-Ex.timings:

nameusersystemelapsed
leafdev42.16 0.4142.56
leafdevBQ20.70 0.5321.25
leafdevFit0.860.030.88
leafdevInfCompare0.840.030.88
leafdevMapAndFilterTAIR99.030.119.14