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BioC experimental data: CHECK report for miRNATarget on zin2

This page was generated on 2014-10-04 17:40:33 -0700 (Sat, 04 Oct 2014).

Package 134/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.2.0
Y-h. Taguchi
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/miRNATarget
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: miRNATarget
Version: 1.2.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.2.0.tar.gz
StartedAt: 2014-10-04 09:31:23 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 09:32:11 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 48.1 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [2s/3s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [14s/14s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

miRNATarget.Rcheck/00install.out:

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0160.0000.018
HS_refseq_to_affy_hc_g1100.0040.0000.006
HS_refseq_to_affy_hg_focus0.0240.0000.022
HS_refseq_to_affy_hg_u133_plus_20.0640.0000.065
HS_refseq_to_affy_hg_u133a0.040.000.04
HS_refseq_to_affy_hg_u133a_20.040.000.04
HS_refseq_to_affy_hg_u133b0.0320.0000.030
HS_refseq_to_affy_hg_u95a0.0280.0000.027
HS_refseq_to_affy_hg_u95av20.0200.0040.024
HS_refseq_to_affy_hg_u95b0.0160.0000.016
HS_refseq_to_affy_hg_u95c0.0680.0000.066
HS_refseq_to_affy_hg_u95d0.0080.0000.006
HS_refseq_to_affy_hg_u95e0.0120.0000.011
HS_refseq_to_affy_huex_1_0_st_v21.4800.0121.495
HS_refseq_to_affy_hugene_1_0_st_v10.0480.0040.054
HS_refseq_to_affy_hugenefl0.0160.0000.016
HS_refseq_to_affy_u133_x3p0.1040.0040.110
HS_refseq_to_agilent_cgh_44b0.0160.0000.015
HS_refseq_to_agilent_wholegenome0.1760.0000.177
HS_refseq_to_canonical_transcript_stable_id0.0680.0000.070
HS_refseq_to_ccds0.0320.0000.041
HS_refseq_to_codelink0.0320.0040.038
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0040.0000.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0000.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0040.0000.002
HS_refseq_to_embl0.6680.0080.676
HS_refseq_to_ensembl_exon_id0.0040.0000.003
HS_refseq_to_ensembl_gene_id0.0560.0000.056
HS_refseq_to_ensembl_peptide_id0.0480.0040.051
HS_refseq_to_ensembl_transcript_id0.1440.0000.144
HS_refseq_to_entrezgene0.0480.0000.049
HS_refseq_to_hgnc_id0.0440.0000.046
HS_refseq_to_hgnc_symbol0.0480.0000.049
HS_refseq_to_hgnc_transcript_name0.0560.0000.054
HS_refseq_to_illumina_humanht_120.0560.0000.056
HS_refseq_to_illumina_humanwg_6_v10.0520.0000.049
HS_refseq_to_illumina_humanwg_6_v20.0440.0000.044
HS_refseq_to_illumina_humanwg_6_v30.0520.0000.052
HS_refseq_to_interpro0.1840.0000.182
HS_refseq_to_ipi0.1800.0000.179
HS_refseq_to_merops0.0080.0000.005
HS_refseq_to_pdb0.1040.0000.104
HS_refseq_to_pfam0.0760.0000.079
HS_refseq_to_phalanx_onearray0.0440.0000.047
HS_refseq_to_protein_id1.2520.0121.267
HS_refseq_to_refseq_dna0.0640.0000.063
HS_refseq_to_refseq_genomic0.0040.0000.002
HS_refseq_to_refseq_peptide0.0960.0000.098
HS_refseq_to_rfam0.0360.0000.039
HS_refseq_to_rfam_gene_name0.0000.0000.001
HS_refseq_to_rfam_transcript_name0.0000.0000.002
HS_refseq_to_smart0.0400.0000.037
HS_refseq_to_tigrfam0.0040.0000.006
HS_refseq_to_ucsc0.1000.0000.106
HS_refseq_to_unigene0.1960.0000.196
HS_refseq_to_uniprot_genename0.040.000.04
HS_refseq_to_uniprot_genename_transcript_name0.0040.0000.003
HS_refseq_to_uniprot_sptrembl0.0040.0000.003
HS_refseq_to_uniprot_swissprot0.0040.0000.002
HS_refseq_to_uniprot_swissprot_accession0.0040.0000.002
HS_refseq_to_wikigene_id0.0000.0000.003
HS_refseq_to_wikigene_name0.0480.0000.317
MM_conv_id0.0040.0000.003
MM_refseq_to_affy_mg_u74a0.0160.0000.015
MM_refseq_to_affy_mg_u74av20.0160.0000.022
MM_refseq_to_affy_mg_u74b0.0120.0000.011
MM_refseq_to_affy_mg_u74bv20.0120.0000.012
MM_refseq_to_affy_mg_u74c0.0040.0000.005
MM_refseq_to_affy_mg_u74cv20.0040.0000.006
MM_refseq_to_affy_moe430a0.0240.0040.030
MM_refseq_to_affy_moe430b0.0160.0000.014
MM_refseq_to_affy_moex_1_0_st_v10.3720.0000.372
MM_refseq_to_affy_mogene_1_0_st_v10.0400.0000.041
MM_refseq_to_affy_mouse430_20.0440.0000.047
MM_refseq_to_affy_mouse430a_20.0320.0000.033
MM_refseq_to_affy_mu11ksuba0.0120.0000.012
MM_refseq_to_affy_mu11ksubb0.0040.0040.008
MM_refseq_to_agilent_wholegenome0.0640.0000.065
MM_refseq_to_canonical_transcript_stable_id0.0600.0000.111
MM_refseq_to_ccds0.0320.0000.030
MM_refseq_to_codelink0.0320.0000.033
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0040.0000.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0640.0000.063
MM_refseq_to_embl0.2840.0000.288
MM_refseq_to_ensembl_exon_id0.0000.0000.002
MM_refseq_to_ensembl_gene_id0.0360.0000.037
MM_refseq_to_ensembl_peptide_id0.0360.0000.037
MM_refseq_to_ensembl_transcript_id0.0360.0000.039
MM_refseq_to_entrezgene0.0320.0000.034
MM_refseq_to_fantom0.1640.0000.164
MM_refseq_to_illumina_mousewg_6_v10.0480.0000.047
MM_refseq_to_illumina_mousewg_6_v20.0480.0000.049
MM_refseq_to_interpro0.1040.0000.102
MM_refseq_to_ipi0.0040.0000.002
MM_refseq_to_merops0.0040.0000.005
MM_refseq_to_mgi_id0.1880.0040.192
MM_refseq_to_mgi_symbol0.0360.0000.038
MM_refseq_to_mgi_transcript_name0.0400.0000.039
MM_refseq_to_pdb0.0080.0000.010
MM_refseq_to_pfam0.0600.0000.061
MM_refseq_to_phalanx_onearray0.0360.0000.035
MM_refseq_to_protein_id0.4520.0000.454
MM_refseq_to_refseq_dna0.0520.0000.052
MM_refseq_to_refseq_peptide0.0680.0000.070
MM_refseq_to_rfam0.0000.0000.003
MM_refseq_to_rfam_gene_name0.0000.0000.002
MM_refseq_to_rfam_transcript_name0.0040.0000.002
MM_refseq_to_smart0.0280.0000.029
MM_refseq_to_tigrfam0.0040.0000.005
MM_refseq_to_ucsc0.0360.0000.035
MM_refseq_to_unigene0.0400.0040.047
MM_refseq_to_uniprot_genename0.0320.0000.034
MM_refseq_to_uniprot_genename_transcript_name0.0000.0000.003
MM_refseq_to_uniprot_sptrembl0.0000.0000.003
MM_refseq_to_uniprot_swissprot0.0000.0000.003
MM_refseq_to_uniprot_swissprot_accession0.0000.0000.003
MM_refseq_to_wikigene_id0.0000.0000.003
MM_refseq_to_wikigene_name0.0360.0000.035
TBL21.0400.0801.123
TBL2_HS1.5840.1041.715
TBL2_MM0.8760.0840.962
conv_id0.0040.0000.003
id_conv0.0320.0000.031