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BioC experimental data: CHECK report for cMap2data on petty

This page was generated on 2014-10-04 17:43:34 -0700 (Sat, 04 Oct 2014).

Package 40/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cMap2data 1.0.0
J. Saez-Rodriguez
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/cMap2data
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: cMap2data
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cMap2data_1.0.0.tar.gz
StartedAt: 2014-10-04 09:00:07 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 09:00:55 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 48.8 seconds
RetCode: 0
Status:  OK 
CheckDir: cMap2data.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cMap2data_1.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/cMap2data.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cMap2data/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cMap2data’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cMap2data’ can be installed ... [31s/32s] OK
* checking installed package size ... NOTE
  installed size is 41.3Mb
  sub-directories of 1Mb or more:
    data  41.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: cMap2data-package.Rd:35-37: Dropping empty section \seealso
prepare_Rd: druglabels.Rd:11-13: Dropping empty section \details
prepare_Rd: genelist.Rd:14-16: Dropping empty section \source
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/cMap2data.Rcheck/00check.log’
for details.

cMap2data.Rcheck/00install.out:

* installing *source* package ‘cMap2data’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cMap2data)

cMap2data.Rcheck/cMap2data-Ex.timings:

nameusersystemelapsed
cMap2data-package0.0290.0020.031
cytodrug0.0010.0010.002
drugClusters0.0020.0000.002
drugRL0.0020.0010.002
druglabels0.0020.0000.002
genelist0.0010.0000.002