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BioC 2.14: CHECK report for DynDoc on moscato2

This page was generated on 2014-10-08 08:50:35 -0700 (Wed, 08 Oct 2014).

Package 242/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DynDoc 1.42.0
Bioconductor Package Maintainer
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/DynDoc
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: DynDoc
Version: 1.42.0
Command: rm -rf DynDoc.buildbin-libdir && mkdir DynDoc.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DynDoc.buildbin-libdir DynDoc_1.42.0.tar.gz >DynDoc-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=DynDoc.buildbin-libdir --install="check:DynDoc-install.out" --force-multiarch --no-vignettes --timings DynDoc_1.42.0.tar.gz
StartedAt: 2014-10-08 00:43:38 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 00:44:03 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 24.5 seconds
RetCode: 0
Status:  OK  
CheckDir: DynDoc.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf DynDoc.buildbin-libdir && mkdir DynDoc.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=DynDoc.buildbin-libdir DynDoc_1.42.0.tar.gz >DynDoc-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=DynDoc.buildbin-libdir --install="check:DynDoc-install.out" --force-multiarch --no-vignettes --timings DynDoc_1.42.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/DynDoc.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DynDoc/DESCRIPTION' ... OK
* this is package 'DynDoc' version '1.42.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DynDoc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'methods' which was already attached by Depends.
  Please remove these calls from your code.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'DynDoc/R/zzz.R':
  .onLoad has wrong argument list 'pkgname, libname'

Package startup functions should have two arguments with names starting
  with 'lib' and 'pkg', respectively.
See section 'Good practice' in '?.onAttach'.

getVignette: no visible global function definition for
  'buildVersionNumber'
getVignette: no visible global function definition for
  'package.description'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'E:/biocbld/bbs-2.14-bioc/meat/DynDoc.Rcheck/00check.log'
for details.

DynDoc.Rcheck/00install.out:


install for i386

* installing *source* package 'DynDoc' ...
** R
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'DynDoc'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'DynDoc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DynDoc' as DynDoc_1.42.0.zip
* DONE (DynDoc)

DynDoc.Rcheck/examples_i386/DynDoc-Ex.timings:

nameusersystemelapsed
chunkList-class0.10.00.1
codeChunk-class0.030.000.03
getPkgVigList000
tangleToR0.010.000.02

DynDoc.Rcheck/examples_x64/DynDoc-Ex.timings:

nameusersystemelapsed
chunkList-class0.10.00.1
codeChunk-class0.020.000.02
getPkgVigList000
tangleToR0.030.000.03