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BioC 2.14: BUILD report for Clonality on morelia

This page was generated on 2014-10-08 09:04:37 -0700 (Wed, 08 Oct 2014).

Package 157/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Clonality 1.12.0
Irina Ostrovnaya
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/Clonality
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  ERROR  skipped  skipped 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: Clonality
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Clonality
StartedAt: 2014-10-07 19:23:54 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 19:23:58 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 4.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Clonality
###
##############################################################################
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* checking for file ‘Clonality/DESCRIPTION’ ... OK
* preparing ‘Clonality’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.

Attaching package: ‘gdata’

The following object is masked from ‘package:stats’:

    nobs

The following object is masked from ‘package:utils’:

    object.size

trying URL 'http://waldmanlab.org/Breast/Hwang.data.xls'
Warning in download.file(xls, tf, mode = "wb") :
  unable to resolve 'waldmanlab.org'

Error: processing vignette 'Clonality.Rnw' failed with diagnostics:
 chunk 2 (label = read data) 
Error in file.exists(tfn) : invalid 'file' argument
Execution halted