BioC experimental data: CHECK report for seqCNA.annot on moscato1

Package: seqCNA.annot

Version: 0.99.1

Command: rm -rf seqCNA.annot.buildbin-libdir && mkdir seqCNA.annot.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=seqCNA.annot.buildbin-libdir seqCNA.annot_0.99.1.tar.gz >seqCNA.annot-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=seqCNA.annot.buildbin-libdir --install="check:seqCNA.annot-install.out" --force-multiarch --no-vignettes --timings seqCNA.annot_0.99.1.tar.gz && mv seqCNA.annot.buildbin-libdir/* seqCNA.annot.Rcheck/ && rmdir seqCNA.annot.buildbin-libdir

StartedAt: 2014-04-04 12:32:12 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:33:53 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 100.4 seconds

RetCode: 0

Status:  OK

CheckDir: seqCNA.annot.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/seqCNA.annot.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seqCNA.annot/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seqCNA.annot' version '0.99.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seqCNA.annot' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 14.5Mb
  sub-directories of 1Mb or more:
    data  14.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
Examples with CPU or elapsed time > 5s
     user system elapsed
hg18 7.26   0.17    7.42
hg19 6.48   0.05    6.53
** running examples for arch 'x64' ... [14s] OK
Examples with CPU or elapsed time > 5s
     user system elapsed
hg18 7.16   0.17    7.33
hg19 6.51   0.11    6.62
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/seqCNA.annot.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'seqCNA.annot' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'seqCNA.annot' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqCNA.annot' as seqCNA.annot_0.99.1.zip
* DONE (seqCNA.annot)

name	user	system	elapsed
hg18	7.26	0.17	7.42
hg18_len	0.01	0.01	0.03
hg19	6.48	0.05	6.53
hg19_len	0	0	0
supported.builds	0	0	0

name	user	system	elapsed
hg18	7.16	0.17	7.33
hg18_len	0	0	0
hg19	6.51	0.11	6.62
hg19_len	0	0	0
supported.builds	0	0	0