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BioC experimental data: CHECK report for miRNATarget on perceval

This page was generated on 2014-04-04 17:29:18 -0700 (Fri, 04 Apr 2014).

Package 118/181HostnameOS / ArchBUILDCHECKBUILD BIN
miRNATarget 1.1.2
Y-h. Taguchi
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/miRNATarget
Last Changed Rev: 2651 / Revision: 2768
Last Changed Date: 2013-12-19 10:09:46 -0800 (Thu, 19 Dec 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: miRNATarget
Version: 1.1.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_1.1.2.tar.gz
StartedAt: 2014-04-04 11:23:22 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 11:25:58 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 155.3 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [3s/7s] OK
* checking installed package size ... NOTE
  installed size is 23.0Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [26s/26s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

miRNATarget.Rcheck/00install.out:

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0310.0040.035
HS_refseq_to_affy_hc_g1100.0120.0020.015
HS_refseq_to_affy_hg_focus0.0400.0050.044
HS_refseq_to_affy_hg_u133_plus_20.2210.0090.230
HS_refseq_to_affy_hg_u133a0.0930.0040.098
HS_refseq_to_affy_hg_u133a_20.0800.0050.083
HS_refseq_to_affy_hg_u133b0.0480.0040.053
HS_refseq_to_affy_hg_u95a0.0560.0040.061
HS_refseq_to_affy_hg_u95av20.0590.0040.062
HS_refseq_to_affy_hg_u95b0.0440.0040.049
HS_refseq_to_affy_hg_u95c0.0360.0040.039
HS_refseq_to_affy_hg_u95d0.0290.0030.032
HS_refseq_to_affy_hg_u95e0.0330.0040.135
HS_refseq_to_affy_huex_1_0_st_v22.5670.0912.657
HS_refseq_to_affy_hugene_1_0_st_v10.0860.0190.105
HS_refseq_to_affy_hugenefl0.0280.0080.036
HS_refseq_to_affy_u133_x3p0.1410.0110.151
HS_refseq_to_agilent_cgh_44b0.0520.0090.061
HS_refseq_to_agilent_wholegenome0.0870.0090.096
HS_refseq_to_canonical_transcript_stable_id0.0830.0110.095
HS_refseq_to_ccds0.0630.0080.071
HS_refseq_to_codelink0.0730.0190.092
HS_refseq_to_embl0.4600.0280.488
HS_refseq_to_ensembl_gene_id0.1220.0110.132
HS_refseq_to_ensembl_peptide_id0.1540.0140.167
HS_refseq_to_ensembl_transcript_id0.1590.0120.170
HS_refseq_to_entrezgene0.1280.0150.142
HS_refseq_to_hgnc_id0.1220.0150.136
HS_refseq_to_hgnc_symbol0.1920.0070.199
HS_refseq_to_hgnc_transcript_name0.1130.0230.135
HS_refseq_to_illumina_humanht_120.1050.0100.114
HS_refseq_to_illumina_humanwg_6_v10.0880.0110.099
HS_refseq_to_illumina_humanwg_6_v20.1620.0170.178
HS_refseq_to_illumina_humanwg_6_v30.1610.0180.180
HS_refseq_to_interpro0.2230.0120.235
HS_refseq_to_ipi0.1970.0120.209
HS_refseq_to_merops0.0070.0030.010
HS_refseq_to_pdb0.0570.0150.072
HS_refseq_to_pfam0.1300.0130.143
HS_refseq_to_phalanx_onearray0.1380.0110.149
HS_refseq_to_protein_id0.4730.0230.495
HS_refseq_to_refseq_dna0.0800.0100.091
HS_refseq_to_refseq_genomic0.0040.0040.008
HS_refseq_to_refseq_peptide0.0970.0140.111
HS_refseq_to_rfam0.0180.0050.023
HS_refseq_to_rfam_gene_name0.0170.0040.022
HS_refseq_to_rfam_transcript_name0.0170.0050.021
HS_refseq_to_smart0.0560.0070.063
HS_refseq_to_tigrfam0.0090.0060.014
HS_refseq_to_ucsc0.0920.0100.102
HS_refseq_to_unigene0.1050.0090.115
HS_refseq_to_uniprot_genename0.1060.0120.118
HS_refseq_to_wikigene_name0.0770.0110.088
MM_conv_id0.0050.0030.009
MM_refseq_to_affy_mg_u74a0.0290.0130.042
MM_refseq_to_affy_mg_u74av20.0310.0050.036
MM_refseq_to_affy_mg_u74b0.0290.0090.039
MM_refseq_to_affy_mg_u74bv20.0250.0080.034
MM_refseq_to_affy_mg_u74c0.0090.0100.019
MM_refseq_to_affy_mg_u74cv20.0130.0040.017
MM_refseq_to_affy_moe430a0.0680.0100.077
MM_refseq_to_affy_moe430b0.0390.0100.049
MM_refseq_to_affy_moex_1_0_st_v10.7380.0430.780
MM_refseq_to_affy_mogene_1_0_st_v10.1040.0100.115
MM_refseq_to_affy_mouse430_20.1510.0110.161
MM_refseq_to_affy_mouse430a_20.0870.0090.096
MM_refseq_to_affy_mu11ksuba0.0460.0090.055
MM_refseq_to_affy_mu11ksubb0.0160.0050.020
MM_refseq_to_agilent_wholegenome0.0740.0200.094
MM_refseq_to_canonical_transcript_stable_id0.0710.0080.080
MM_refseq_to_ccds0.0980.0220.120
MM_refseq_to_codelink0.0980.0170.114
MM_refseq_to_embl0.3030.0160.319
MM_refseq_to_ensembl_gene_id0.1710.0120.183
MM_refseq_to_ensembl_peptide_id0.2890.0130.301
MM_refseq_to_ensembl_transcript_id0.0710.0120.083
MM_refseq_to_entrezgene0.0660.0120.079
MM_refseq_to_fantom0.0880.0190.108
MM_refseq_to_illumina_mousewg_6_v10.0830.0080.091
MM_refseq_to_illumina_mousewg_6_v20.0900.0080.100
MM_refseq_to_interpro0.1370.0150.152
MM_refseq_to_ipi0.0930.0120.104
MM_refseq_to_merops0.0070.0030.010
MM_refseq_to_mgi_id0.0670.0100.077
MM_refseq_to_mgi_symbol0.0680.0130.081
MM_refseq_to_mgi_transcript_name0.0730.0220.095
MM_refseq_to_pdb0.0100.0050.014
MM_refseq_to_pfam0.0700.0160.087
MM_refseq_to_phalanx_onearray0.1020.0080.110
MM_refseq_to_protein_id0.2740.0220.297
MM_refseq_to_refseq_dna0.0630.0070.070
MM_refseq_to_refseq_peptide0.1300.0100.139
MM_refseq_to_rfam0.0040.0020.006
MM_refseq_to_rfam_gene_name0.0560.0020.058
MM_refseq_to_rfam_transcript_name0.1410.0050.146
MM_refseq_to_smart0.0890.0180.107
MM_refseq_to_tigrfam0.0480.0090.057
MM_refseq_to_ucsc0.1010.0140.115
MM_refseq_to_unigene0.1360.0110.147
MM_refseq_to_uniprot_genename0.0890.0070.097
MM_refseq_to_wikigene_name0.0710.0080.079
TBL21.6580.1311.789
TBL2_HS2.9190.2953.214
TBL2_MM1.3460.2091.556
conv_id0.0050.0040.009
id_conv0.0630.0060.069