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BioC 2.13: CHECK report for interactiveDisplay on perceval

This page was generated on 2014-04-05 09:53:17 -0700 (Sat, 05 Apr 2014).

Package 373/750HostnameOS / ArchBUILDCHECKBUILD BIN
interactiveDisplay 1.0.9
Shawn Balcome
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/interactiveDisplay
Last Changed Rev: 88095 / Revision: 88450
Last Changed Date: 2014-03-28 09:55:06 -0700 (Fri, 28 Mar 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: interactiveDisplay
Version: 1.0.9
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch interactiveDisplay_1.0.9.tar.gz
StartedAt: 2014-04-05 02:08:06 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 02:14:28 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 382.8 seconds
RetCode: 0
Status:  OK 
CheckDir: interactiveDisplay.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.13-bioc/meat/interactiveDisplay.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘interactiveDisplay/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘interactiveDisplay’ version ‘1.0.9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘interactiveDisplay’ can be installed ... [36s/37s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ggheat: no visible binding for global variable ‘Var2’
ggheat: no visible binding for global variable ‘Var1’
ggheat: no visible binding for global variable ‘value’
display,SummarizedExperiment : <anonymous>: no visible binding for
  global variable ‘Var1’
display,SummarizedExperiment : <anonymous>: no visible binding for
  global variable ‘Var2’
display,SummarizedExperiment : <anonymous>: no visible binding for
  global variable ‘value’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/19s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-bioc/meat/interactiveDisplay.Rcheck/00check.log’
for details.

interactiveDisplay.Rcheck/00install.out:

* installing *source* package ‘interactiveDisplay’ ...
** R
** data
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘RJSONIO’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘RJSONIO’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
* DONE (interactiveDisplay)

interactiveDisplay.Rcheck/interactiveDisplay-Ex.timings:

nameusersystemelapsed
expr0.5790.0110.598
gridsvgjs0.0160.0060.022
interactiveDisplay-methods0.0200.0070.029
mmgr0.0140.0130.032
mmgrl0.0110.0040.016
se0.0950.0140.112