BioC 2.13: CHECK report for interactiveDisplay on moscato1

Package: interactiveDisplay

Version: 1.0.9

Command: rm -rf interactiveDisplay.buildbin-libdir && mkdir interactiveDisplay.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=interactiveDisplay.buildbin-libdir interactiveDisplay_1.0.9.tar.gz >interactiveDisplay-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=interactiveDisplay.buildbin-libdir --install="check:interactiveDisplay-install.out" --force-multiarch --no-vignettes --timings interactiveDisplay_1.0.9.tar.gz && mv interactiveDisplay.buildbin-libdir/* interactiveDisplay.Rcheck/ && rmdir interactiveDisplay.buildbin-libdir

StartedAt: 2014-04-05 04:42:08 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 04:47:51 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 343.2 seconds

RetCode: 0

Status:  OK

CheckDir: interactiveDisplay.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/interactiveDisplay.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'interactiveDisplay/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'interactiveDisplay' version '1.0.9'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'interactiveDisplay' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ggheat: no visible binding for global variable 'Var2'
ggheat: no visible binding for global variable 'Var1'
ggheat: no visible binding for global variable 'value'
display,SummarizedExperiment : <anonymous>: no visible binding for
  global variable 'Var1'
display,SummarizedExperiment : <anonymous>: no visible binding for
  global variable 'Var2'
display,SummarizedExperiment : <anonymous>: no visible binding for
  global variable 'value'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** running examples for arch 'x64' ... [12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/interactiveDisplay.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'interactiveDisplay' ...
** R
** data
** inst
** preparing package for lazy loading
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.

install for x64

* installing *source* package 'interactiveDisplay' ...
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
* MD5 sums
packaged installation of 'interactiveDisplay' as interactiveDisplay_1.0.9.zip
* DONE (interactiveDisplay)

name	user	system	elapsed
expr	0.25	0.00	0.25
gridsvgjs	0.02	0.00	0.02
interactiveDisplay-methods	0.02	0.00	0.01
mmgr	0.01	0.00	0.02
mmgrl	0	0	0
se	0.11	0.00	0.11

name	user	system	elapsed
expr	0.01	0.02	0.04
gridsvgjs	0	0	0
interactiveDisplay-methods	0	0	0
mmgr	0	0	0
mmgrl	0.00	0.01	0.01
se	0.1	0.0	0.1