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BioC 2.13: CHECK report for flowViz on zin1

This page was generated on 2014-04-05 09:47:24 -0700 (Sat, 05 Apr 2014).

Package 265/750HostnameOS / ArchBUILDCHECKBUILD BIN
flowViz 1.26.16
Mike Jiang
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/flowViz
Last Changed Rev: 85844 / Revision: 88450
Last Changed Date: 2014-01-27 12:12:06 -0800 (Mon, 27 Jan 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: flowViz
Version: 1.26.16
Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings flowViz_1.26.16.tar.gz
StartedAt: 2014-04-05 01:12:41 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 01:15:07 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 145.4 seconds
RetCode: 0
Status:  OK 
CheckDir: flowViz.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.13-bioc/meat/flowViz.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowViz’ version ‘1.26.16’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowViz’ can be installed ... [6s/6s] OK
* checking installed package size ... NOTE
  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    doc   9.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘flowCore’ ‘lattice’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ‘:::’ calls:
  ‘flowCore:::findTimeChannel’ ‘flowCore:::prepareSet’
  ‘lattice:::updateList’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘evalInFlowFrame’
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [80s/80s] OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
xyplot                 22.757  0.088  22.943
ecdfplot               12.357  0.184  12.760
splom                  10.393  0.080  10.580
densityplot            10.196  0.104  10.319
latticeMethods-flowSet  9.677  0.132   9.843
timeLinePlot-methods    6.508  0.024   6.585
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  ‘/home/biocbuild/bbs-2.13-bioc/meat/flowViz.Rcheck/00check.log’
for details.

flowViz.Rcheck/00install.out:

* installing *source* package ‘flowViz’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowViz)

flowViz.Rcheck/flowViz-Ex.timings:

nameusersystemelapsed
contour-methods2.0600.0362.113
densityplot10.196 0.10410.319
ecdfplot12.357 0.18412.760
flowPlot0.7920.0160.810
flowViz-package0.0040.0000.002
flowViz.par.get1.1920.0241.216
latticeMethods-flowSet9.6770.1329.843
splom10.393 0.08010.580
timeLinePlot-methods6.5080.0246.585
xyplot22.757 0.08822.943