Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.13: CHECK report for flowViz on moscato1

This page was generated on 2014-04-05 09:49:24 -0700 (Sat, 05 Apr 2014).

Package 265/750HostnameOS / ArchBUILDCHECKBUILD BIN
flowViz 1.26.16
Mike Jiang
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/flowViz
Last Changed Rev: 85844 / Revision: 88450
Last Changed Date: 2014-01-27 12:12:06 -0800 (Mon, 27 Jan 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: flowViz
Version: 1.26.16
Command: rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowViz.buildbin-libdir flowViz_1.26.16.tar.gz >flowViz-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=flowViz.buildbin-libdir --install="check:flowViz-install.out" --force-multiarch --no-vignettes --timings flowViz_1.26.16.tar.gz && mv flowViz.buildbin-libdir/* flowViz.Rcheck/ && rmdir flowViz.buildbin-libdir
StartedAt: 2014-04-05 03:55:46 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 04:02:08 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 382.2 seconds
RetCode: 0
Status:  OK  
CheckDir: flowViz.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/flowViz.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowViz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowViz' version '1.26.16'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowViz' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.5Mb
  sub-directories of 1Mb or more:
    doc   9.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'flowCore' 'lattice'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'flowCore:::findTimeChannel' 'flowCore:::prepareSet'
  'lattice:::updateList'
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'evalInFlowFrame'
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [119s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
xyplot                 27.76   0.13   29.42
densityplot            16.29   0.52   17.44
ecdfplot               16.25   0.17   16.54
splom                  15.60   0.19   16.11
latticeMethods-flowSet 14.90   0.20   16.54
timeLinePlot-methods   12.09   0.03   12.70
** running examples for arch 'x64' ... [123s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
xyplot                 31.41   0.09   33.77
ecdfplot               18.73   0.23   18.97
latticeMethods-flowSet 16.07   0.33   18.30
splom                  15.40   0.19   17.33
densityplot            14.79   0.58   16.04
timeLinePlot-methods    8.44   0.06    8.50
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/flowViz.Rcheck/00check.log'
for details.

flowViz.Rcheck/00install.out:


install for i386

* installing *source* package 'flowViz' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowViz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowViz' as flowViz_1.26.16.zip
* DONE (flowViz)

flowViz.Rcheck/examples_i386/flowViz-Ex.timings:

nameusersystemelapsed
contour-methods2.320.012.34
densityplot16.29 0.5217.44
ecdfplot16.25 0.1716.54
flowPlot1.550.051.68
flowViz-package0.000.000.07
flowViz.par.get2.080.012.42
latticeMethods-flowSet14.90 0.2016.54
splom15.60 0.1916.11
timeLinePlot-methods12.09 0.0312.70
xyplot27.76 0.1329.42

flowViz.Rcheck/examples_x64/flowViz-Ex.timings:

nameusersystemelapsed
contour-methods2.870.013.15
densityplot14.79 0.5816.04
ecdfplot18.73 0.2318.97
flowPlot1.200.021.22
flowViz-package000
flowViz.par.get1.670.031.70
latticeMethods-flowSet16.07 0.3318.30
splom15.40 0.1917.33
timeLinePlot-methods8.440.068.50
xyplot31.41 0.0933.77