Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.13: CHECK report for chipenrich on moscato1

This page was generated on 2014-04-05 09:51:29 -0700 (Sat, 05 Apr 2014).

Package 130/750HostnameOS / ArchBUILDCHECKBUILD BIN
chipenrich 1.0.0
Ryan P. Welch
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/chipenrich
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: chipenrich
Version: 1.0.0
Command: rm -rf chipenrich.buildbin-libdir && mkdir chipenrich.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=chipenrich.buildbin-libdir chipenrich_1.0.0.tar.gz >chipenrich-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=chipenrich.buildbin-libdir --install="check:chipenrich-install.out" --force-multiarch --no-vignettes --timings chipenrich_1.0.0.tar.gz && mv chipenrich.buildbin-libdir/* chipenrich.Rcheck/ && rmdir chipenrich.buildbin-libdir
StartedAt: 2014-04-05 02:55:40 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 03:05:56 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 616.0 seconds
RetCode: 0
Status:  OK  
CheckDir: chipenrich.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/chipenrich.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'chipenrich/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'chipenrich' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'chipenrich' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chipenrich: no visible binding for global variable 'P.value'
load_peaks: no visible binding for global variable 'chrom'
read_bed: no visible binding for global variable 'chrom'
read_peaks: no visible binding for global variable 'chrom'
setup_ldef: no visible binding for global variable 'chrom'
test_binomial: no visible binding for global variable 'geneid'
test_fisher_exact: no visible binding for global variable 'geneid'
test_gam: no visible binding for global variable 'geneid'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [202s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
chipenrich          85.55   0.01   85.64
plot_expected_peaks 53.60   0.07   53.87
plot_spline_length  52.38   0.07   52.55
** running examples for arch 'x64' ... [211s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
chipenrich          90.22   0.05   90.30
plot_spline_length  56.10   0.10   56.21
plot_expected_peaks 53.07   0.03   53.12
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/chipenrich.Rcheck/00check.log'
for details.

chipenrich.Rcheck/00install.out:


install for i386

* installing *source* package 'chipenrich' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'chipenrich' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chipenrich' as chipenrich_1.0.0.zip
* DONE (chipenrich)

chipenrich.Rcheck/examples_i386/chipenrich-Ex.timings:

nameusersystemelapsed
chipenrich85.55 0.0185.64
plot_dist_to_tss3.130.003.15
plot_expected_peaks53.60 0.0753.87
plot_spline_length52.38 0.0752.55
supported_genesets0.010.000.03
supported_genomes0.020.000.01
supported_locusdefs0.010.000.02
supported_methods000
supported_read_lengths000

chipenrich.Rcheck/examples_x64/chipenrich-Ex.timings:

nameusersystemelapsed
chipenrich90.22 0.0590.30
plot_dist_to_tss2.910.042.97
plot_expected_peaks53.07 0.0353.12
plot_spline_length56.10 0.1056.21
supported_genesets0.010.000.01
supported_genomes0.020.000.02
supported_locusdefs0.020.000.02
supported_methods000
supported_read_lengths0.020.000.02