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BioC 2.13: CHECK report for a4Core on moscato1

This page was generated on 2014-04-05 09:50:19 -0700 (Sat, 05 Apr 2014).

Package 4/750HostnameOS / ArchBUILDCHECKBUILD BIN
a4Core 1.10.0
Tobias Verbeke , Willem Ligtenberg
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/a4Core
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: a4Core
Version: 1.10.0
Command: rm -rf a4Core.buildbin-libdir && mkdir a4Core.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=a4Core.buildbin-libdir a4Core_1.10.0.tar.gz >a4Core-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=a4Core.buildbin-libdir --install="check:a4Core-install.out" --force-multiarch --no-vignettes --timings a4Core_1.10.0.tar.gz && mv a4Core.buildbin-libdir/* a4Core.Rcheck/ && rmdir a4Core.buildbin-libdir
StartedAt: 2014-04-05 01:57:19 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 01:59:14 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 114.6 seconds
RetCode: 0
Status:  OK  
CheckDir: a4Core.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/a4Core.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'a4Core/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4Core' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'a4Core' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'Biobase' 'glmnet' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/a4Core.Rcheck/00check.log'
for details.

a4Core.Rcheck/00install.out:


install for i386

* installing *source* package 'a4Core' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'a4Core' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Core' as a4Core_1.10.0.zip
* DONE (a4Core)

a4Core.Rcheck/examples_i386/a4Core-Ex.timings:

nameusersystemelapsed
simulateData0.290.000.30

a4Core.Rcheck/examples_x64/a4Core-Ex.timings:

nameusersystemelapsed
simulateData0.260.000.26