BioC 2.13: CHECK report for EasyqpcR on moscato1

Package: EasyqpcR

Version: 1.5.0

Command: rm -rf EasyqpcR.buildbin-libdir && mkdir EasyqpcR.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EasyqpcR.buildbin-libdir EasyqpcR_1.5.0.tar.gz >EasyqpcR-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=EasyqpcR.buildbin-libdir --install="check:EasyqpcR-install.out" --force-multiarch --no-vignettes --timings EasyqpcR_1.5.0.tar.gz && mv EasyqpcR.buildbin-libdir/* EasyqpcR.Rcheck/ && rmdir EasyqpcR.buildbin-libdir

StartedAt: 2014-04-05 03:36:47 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 03:38:30 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 103.6 seconds

RetCode: 0

Status:  OK

CheckDir: EasyqpcR.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/EasyqpcR.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EasyqpcR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EasyqpcR' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EasyqpcR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... NOTE
The following files look like leftovers/mistakes:
  'vignette_EasyqpcR.toc'
Please remove them from your package.
* checking examples ...
** running examples for arch 'i386' ... [3s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/EasyqpcR.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'EasyqpcR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'EasyqpcR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EasyqpcR' as EasyqpcR_1.5.0.zip
* DONE (EasyqpcR)

name	user	system	elapsed
Efficiency_calculation	0.04	0.00	0.03
Gene_maximisation	0.01	0.00	0.01
Gene_maximisation_cor	0	0	0
badCt	0.05	0.00	0.05
calData	0.25	0.00	0.25
nrmData	0.13	0.00	0.13
qPCR_run1	0.00	0.01	0.02
qPCR_run2	0	0	0
qPCR_run3	0.00	0.02	0.01
slope	0.01	0.00	0.02
totData	0.60	0.00	0.59

name	user	system	elapsed
Efficiency_calculation	0.13	0.00	0.12
Gene_maximisation	0.01	0.00	0.02
Gene_maximisation_cor	0.02	0.00	0.01
badCt	0.01	0.02	0.03
calData	0.28	0.00	0.28
nrmData	0.14	0.00	0.14
qPCR_run1	0	0	0
qPCR_run2	0.01	0.00	0.01
qPCR_run3	0	0	0
slope	0.01	0.00	0.01
totData	0.58	0.02	0.59