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BioC 2.13: CHECK report for BiocParallel on perceval

This page was generated on 2014-04-05 09:52:59 -0700 (Sat, 05 Apr 2014).

Package 82/750HostnameOS / ArchBUILDCHECKBUILD BIN
BiocParallel 0.4.1
Bioconductor Package Maintainer
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/BiocParallel
Last Changed Rev: 81898 / Revision: 88450
Last Changed Date: 2013-10-20 10:07:38 -0700 (Sun, 20 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ TIMEOUT ] OK 

Summary

Package: BiocParallel
Version: 0.4.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BiocParallel_0.4.1.tar.gz
StartedAt: 2014-04-04 23:45:53 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-05 00:25:53 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 2400.5 seconds
RetCode: None
Status:  TIMEOUT 
CheckDir: BiocParallel.Rcheck
Warnings: NA

Command output

* using log directory ‘/Users/biocbuild/bbs-2.13-bioc/meat/BiocParallel.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BiocParallel’ version ‘0.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocParallel’ can be installed ... [5s/5s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ‘:::’ call: ‘parallel:::getClusterOption’
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [5s/12s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’

BiocParallel.Rcheck/00install.out:

* installing *source* package ‘BiocParallel’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (BiocParallel)

BiocParallel.Rcheck/BiocParallel-Ex.timings:

nameusersystemelapsed
AllClasses0.0050.0000.006
BatchJobsParam-class1.5720.0821.825
DoparParam-class0.2300.0252.384
MulticoreParam-class0.0720.2270.182
SerialParam-class0.0320.0060.038
SnowParam-class0.0400.0174.926
bpcontrols0.0160.0010.017
bplapply0.1160.0030.119
bpmapply0.1310.0020.134
bpschedule0.0400.0790.070
bpvec0.1430.0240.165
bpvectorize0.0120.0010.012
register0.0160.0010.016