BioC experimental data: CHECK report for ggtut on petty

Package: ggtut

Version: 0.0.44

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ggtut_0.0.44.tar.gz

StartedAt: 2013-10-08 13:58:24 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 14:06:25 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 481.6 seconds

RetCode: 0

Status:  OK

CheckDir: ggtut.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-data-experiment/meat/ggtut.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ggtut/DESCRIPTION' ... OK
* this is package 'ggtut' version '0.0.44'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'ggtut' can be installed ... [45s/48s] OK
* checking installed package size ... NOTE
  installed size is 199.8Mb
  sub-directories of 1Mb or more:
    bam          15.1Mb
    data         22.3Mb
    doc          10.5Mb
    ffarchives  136.9Mb
    ffobjects     1.6Mb
    images       12.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'ggtut/R/zzz.R':
  .onLoad calls:
    packageStartupMessage("\n\nggtut: as of 10 Jan 2013, SNPlocs requested are hg19-based, but all serialized")
    packageStartupMessage("objects have hg18 coordinates.  Liftovers will be conducted soon.")
    packageStartupMessage("In the mean time, this package is primarily for demonstration that the software functions.\n")

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [33s/33s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
rules.n43 8.739  0.194   8.987
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-data-experiment/meat/ggtut.Rcheck/00check.log'
for details.

* installing *source* package 'ggtut' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ggtut)

name	user	system	elapsed
c17imp	1.902	0.084	2.024
g17rngsnr	0.088	0.008	0.096
ggtut-package	0.232	0.014	0.271
observed17ceu	0.241	0.020	0.284
rules.n43	8.739	0.194	8.987
snpgr17	0.623	0.058	0.692