BioC experimental data: CHECK report for DLBCL on george2

Package: DLBCL

Version: 1.3.6

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings DLBCL_1.3.6.tar.gz

StartedAt: 2013-10-08 12:34:40 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 12:35:41 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 61.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: DLBCL.Rcheck

Warnings: 1

* using log directory ‘/home/biocbuild/bbs-2.12-data-experiment/meat/DLBCL.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DLBCL/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DLBCL’ version ‘1.3.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DLBCL’ can be installed ... [2s/3s] OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   5.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  exprLym.rda        4.3Mb    2.6Mb       xz
  interactome.rda    990Kb    519Kb       xz
* checking examples ... [6s/6s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-data-experiment/meat/DLBCL.Rcheck/00check.log’
for details.

* installing *source* package ‘DLBCL’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (DLBCL)

name	user	system	elapsed
dataLym	0.068	0.004	0.074
exprLym	0.196	0.020	0.224
interactome	3.708	0.068	3.799