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BioC 2.12: CHECK report for imageHTS on moscato2

This page was generated on 2013-10-09 09:38:49 -0700 (Wed, 09 Oct 2013).

Package 338/671HostnameOS / ArchBUILDCHECKBUILD BIN
imageHTS 1.10.0
Gregoire Pau
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/imageHTS
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: imageHTS
Version: 1.10.0
Command: E:\biocbld\bbs-2.12-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.10.0.tar.gz
StartedAt: 2013-10-09 02:42:11 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 02:47:48 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 336.1 seconds
RetCode: 0
Status:  OK  
CheckDir: imageHTS.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/imageHTS.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... [24s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [126s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
extractFeatures 42.37   2.25   44.71
countObjects    19.54   0.98   20.59
segmentWells    10.14   0.75   10.89
segmentYeastBF   6.68   0.42    7.10
getWellFeatures  5.70   0.00    5.69
fileHTS          4.11   0.00    6.72
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

imageHTS.Rcheck/00install.out:

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (imageHTS)

imageHTS.Rcheck/imageHTS-Ex.timings:

nameusersystemelapsed
collectCellFeatures0.010.000.01
countObjects19.54 0.9820.59
extractFeatures42.37 2.2544.71
fileHTS4.110.006.72
getImageConf1.80.01.8
getUnames3.850.023.87
getWellFeatures5.700.005.69
highlightSegmentation000
installCellPicker3.370.033.56
makeCellHTS0.010.000.01
parseDCF0.020.000.02
parseImageConf2.310.002.31
popCellPicker2.250.002.25
prw2uname0.010.000.01
readLearnTS000
segmentATH000
segmentWells10.14 0.7510.89
segmentYeastBF6.680.427.10
summarizeWells000
zprime4.620.034.66