Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.12: CHECK report for genomes on george2

This page was generated on 2013-10-09 09:37:38 -0700 (Wed, 09 Oct 2013).

Package 269/671HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 2.6.0
Chris Stubben
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/genomes
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: genomes
Version: 2.6.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings genomes_2.6.0.tar.gz
StartedAt: 2013-10-09 02:05:00 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 02:09:16 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 256.3 seconds
RetCode: 0
Status:  OK 
CheckDir: genomes.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/genomes.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genomes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomes’ version ‘2.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘genomes’ can be installed ... [21s/21s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [32s/39s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

genomes.Rcheck/00install.out:

* installing *source* package ‘genomes’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
doublingTime2.0040.0482.081
efetch0.0280.0080.035
einfo0.0320.0000.033
elink0.0400.0120.055
ena0.0280.0120.040
enaParse0.0360.0080.043
esearch0.0440.0000.043
esummary0.0480.0000.048
euks0.2160.0040.221
ftpList0.0280.0040.034
genomes-lines1.0680.0121.080
genomes-plot0.9320.0240.959
genomes-print0.2760.0240.301
genomes-summary0.1080.0040.113
genomes-update0.0600.0000.061
genomes0.9930.0161.010
genus0.6000.0120.613
image20.6760.0280.703
like0.5240.0160.540
ncbiGenome0.0520.0000.053
ncbiNucleotide0.1120.0040.542
ncbiProject0.0720.0000.073
ncbiPubmed0.0560.0000.054
ncbiRelease0.0880.0041.206
ncbiSubmit0.5600.0000.587
ncbiTaxonomy0.0200.0040.026
plotby0.8800.0200.898
proks1.6320.0161.645
read.genemark0.2160.0121.370
read.gff0.1200.0160.838
read.glimmer0.2480.0041.314
read.ncbi.ftp0.0280.0120.040
read.prodigal2.0561.3324.406
read.ptt0.5960.4201.919
species0.8040.0200.903
table20.1600.0000.159
virus0.2920.0040.296
year1.0240.0121.036