BioC 2.12: CHECK report for flowViz on petty

Package: flowViz

Version: 1.24.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowViz_1.24.0.tar.gz

StartedAt: 2013-10-08 22:23:47 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 22:28:49 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 301.9 seconds

RetCode: 0

Status:  OK

CheckDir: flowViz.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/flowViz.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowViz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowViz' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'flowViz' can be installed ... [14s/14s] OK
* checking installed package size ... NOTE
  installed size is  9.5Mb
  sub-directories of 1Mb or more:
    doc   9.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gltext: no visible global function definition for 'unit'
gltext: no visible global function definition for 'gpar'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [158s/162s] OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
xyplot                 39.677  2.689  43.345
ecdfplot               24.504  4.610  29.488
latticeMethods-flowSet 19.127  3.365  22.928
splom                  19.755  1.035  21.613
densityplot            18.128  1.665  20.212
timeLinePlot-methods   11.284  0.636  12.122
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/flowViz.Rcheck/00check.log'
for details.

* installing *source* package 'flowViz' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowViz)

name	user	system	elapsed
contour-methods	3.942	0.218	4.205
densityplot	18.128	1.665	20.212
ecdfplot	24.504	4.610	29.488
flowPlot	1.504	0.165	2.167
flowViz-package	0.002	0.004	0.006
flowViz.par.get	0.016	0.016	0.031
latticeMethods-flowSet	19.127	3.365	22.928
splom	19.755	1.035	21.613
timeLinePlot-methods	11.284	0.636	12.122
xyplot	39.677	2.689	43.345