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BioC 2.12: CHECK report for flowPlots on petty

This page was generated on 2013-10-09 09:39:57 -0700 (Wed, 09 Oct 2013).

Package 228/671HostnameOS / ArchBUILDCHECKBUILD BIN
flowPlots 1.8.0
N. Hawkins
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/flowPlots
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: flowPlots
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowPlots_1.8.0.tar.gz
StartedAt: 2013-10-08 22:22:25 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 22:23:43 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 78.4 seconds
RetCode: 0
Status:  OK 
CheckDir: flowPlots.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/flowPlots.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'flowPlots' can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [37s/38s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
StackedData-class 17.021  0.135  17.344
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowPlots.Rcheck/00install.out:

* installing *source* package 'flowPlots' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowPlots)

flowPlots.Rcheck/flowPlots-Ex.timings:

nameusersystemelapsed
GroupListBoxplot0.2430.0150.285
StackedData-class17.021 0.13517.344
adultsNeonates0.0070.0010.008
computeMarginalData-methods4.1940.0264.281
computeMarkers-methods0.0140.0000.015
computePFDData-methods3.7380.0263.770
computePFDGroupStatsList0.3920.0220.414
computePFDPartsData-methods4.7250.0224.753
computeProfileData-methods4.6510.0324.729
legendPFDStatsGroupNames0.1860.0060.198
makeBarplotData0.0330.0030.036
makeDataList0.0900.0020.092
makeTernaryData0.1840.0060.190
marginalDF0.0060.0010.006
marginalData-methods0.0190.0010.020
markerMatrix0.0110.0000.012
markers-methods0.0180.0020.020
pfdDF0.0110.0010.012
pfdData-methods0.0180.0020.021
pfdPartsData-methods0.0210.0020.023
pfdPartsList0.0080.0000.008
profileDF0.0070.0030.009
profileData-methods0.0110.0030.013
readStackedData-methods0.1370.0030.144
stackedData-methods0.1840.0090.193