Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.12: BUILD BIN report for beadarray on petty

This page was generated on 2013-10-09 09:39:30 -0700 (Wed, 09 Oct 2013).

Package 59/671HostnameOS / ArchBUILDCHECKBUILD BIN
beadarray 2.10.0
Mark Dunning
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/beadarray
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: beadarray
Version: 2.10.0
Command: rm -rf beadarray.buildbin-libdir && mkdir beadarray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh beadarray_2.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R beadarray.buildbin-libdir
StartedAt: 2013-10-09 00:47:59 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 00:48:26 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 27.1 seconds
RetCode: 0
Status:  OK 
PackageFile: beadarray_2.10.0.tgz
PackageFileSize: 5.242 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=beadarray.buildbin-libdir beadarray_2.10.0.tar.gz'
>>>>>>> 

* installing *source* package 'beadarray' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c BASH.c -o BASH.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c HULK.c -o HULK.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c determiningGridPositions.c -o determiningGridPositions.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c findAllOutliers.c -o findAllOutliers.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c imageProcessing.c -o imageProcessing.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o beadarray.so BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/beadarray.buildbin-libdir/beadarray/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (beadarray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR beadarray.buildbin-libdir/beadarray/libs//beadarray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "beadarray.buildbin-libdir/beadarray/libs//beadarray.so"