GenomicRanges 1.12.5
Bioconductor Package Maintainer
| Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/GenomicRanges | | Last Changed Rev: 79798 / Revision: 81334 | | Last Changed Date: 2013-08-23 15:28:08 -0700 (Fri, 23 Aug 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
install for i386
* installing *source* package 'GenomicRanges' ...
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:318:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:286:7: note: 'OP' was declared here
cigar_utils.c:310:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:285:17: note: 'OPL' was declared here
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:466:24: warning: 'OP' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:434:7: note: 'OP' was declared here
cigar_utils.c:458:8: warning: 'OPL' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c:433:17: note: 'OPL' was declared here
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1144:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'query_locs_to_ref_locs':
cigar_utils.c:1226:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
gcc -m32 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'GenomicRanges' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1144:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
cigar_utils.c: In function 'query_locs_to_ref_locs':
cigar_utils.c:1226:8: warning: 'n' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I"E:/biocbld/bbs-2.12-bioc/R/library/IRanges/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:142:38: warning: 'end' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:24: note: 'end' was declared here
transcript_utils.c:142:38: warning: 'start' may be used uninitialized in this function [-Wuninitialized]
transcript_utils.c:119:17: note: 'start' was declared here
gcc -m64 -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.12.5.zip
* DONE (GenomicRanges)