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BioC 2.12: BUILD BIN report for GOSemSim on moscato2

This page was generated on 2013-10-09 09:38:40 -0700 (Wed, 09 Oct 2013).

Package 288/671HostnameOS / ArchBUILDCHECKBUILD BIN
GOSemSim 1.18.0
Guangchuang Yu
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/GOSemSim
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS [ OK ]
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: GOSemSim
Version: 1.18.0
Command: rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GOSemSim.buildbin-libdir GOSemSim_1.18.0.tar.gz
StartedAt: 2013-10-09 05:09:57 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 05:11:21 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 83.4 seconds
RetCode: 0
Status:  OK  
PackageFile: GOSemSim_1.18.0.zip
PackageFileSize: 1.418 MiB

Command output


install for i386

* installing *source* package 'GOSemSim' ...
** libs
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c ICmethod.cpp -o ICmethod.o
ICmethod.cpp: In function 'SEXPREC* infoContentMethod_cpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
ICmethod.cpp:20:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:38:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:48:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:70:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:71:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:79:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:450:2: warning: 'sim' may be used uninitialized in this function [-Wuninitialized]
ICmethod.cpp:91:10: note: 'sim' was declared here
ICmethod.cpp:108:50: warning: 'ic2' may be used uninitialized in this function [-Wuninitialized]
ICmethod.cpp:108:50: warning: 'ic1' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/lib/i386/libRcpp.a -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/GOSemSim.buildbin-libdir/GOSemSim/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning: package 'Rcpp' was built under R version 3.0.2
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: package 'Rcpp' was built under R version 3.0.2

install for x64

* installing *source* package 'GOSemSim' ...
** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG    -I"E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c ICmethod.cpp -o ICmethod.o
ICmethod.cpp: In function 'SEXPREC* infoContentMethod_cpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
ICmethod.cpp:20:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:38:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:48:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:70:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:71:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:78:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ICmethod.cpp:79:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:450:2: warning: 'sim' may be used uninitialized in this function [-Wuninitialized]
ICmethod.cpp:91:10: note: 'sim' was declared here
ICmethod.cpp:108:50: warning: 'ic2' may be used uninitialized in this function [-Wuninitialized]
ICmethod.cpp:108:50: warning: 'ic1' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o E:/biocbld/bbs-2.12-bioc/R/library/Rcpp/lib/x64/libRcpp.a -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/GOSemSim.buildbin-libdir/GOSemSim/libs/x64
** testing if installed package can be loaded
Warning: package 'Rcpp' was built under R version 3.0.2
* MD5 sums
packaged installation of 'GOSemSim' as GOSemSim_1.18.0.zip
* DONE (GOSemSim)