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BioC 2.12: CHECK report for DTA on petty

This page was generated on 2013-10-09 09:40:03 -0700 (Wed, 09 Oct 2013).

Package 191/671HostnameOS / ArchBUILDCHECKBUILD BIN
DTA 2.6.0
Bjoern Schwalb
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/DTA
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: DTA
Version: 2.6.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DTA_2.6.0.tar.gz
StartedAt: 2013-10-08 22:13:15 -0700 (Tue, 08 Oct 2013)
EndedAt: 2013-10-08 22:23:39 -0700 (Tue, 08 Oct 2013)
EllapsedTime: 624.0 seconds
RetCode: 0
Status:  OK 
CheckDir: DTA.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DTA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DTA' version '2.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DTA' can be installed ... [3s/4s] OK
* checking installed package size ... NOTE
  installed size is 11.3Mb
  sub-directories of 1Mb or more:
    data   6.8Mb
    doc    4.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [545s/554s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
DTA.dynamic.generate 199.856 20.159 224.249
DTA.estimate         127.228  6.395 135.868
DTA.generate         107.157  5.065 113.261
DTA.dynamic.estimate  72.901  0.612  74.958
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/DTA.Rcheck/00check.log'
for details.

DTA.Rcheck/00install.out:

* installing *source* package 'DTA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DTA)

DTA.Rcheck/DTA-Ex.timings:

nameusersystemelapsed
DTA-package0.0070.0010.006
DTA.dynamic.estimate72.901 0.61274.958
DTA.dynamic.generate199.856 20.159224.249
DTA.estimate127.228 6.395135.868
DTA.generate107.157 5.065113.261
DTA.map.it0.0020.0030.006
DTA.normalize0.0020.0030.005
DTA.phenomat0.0040.0070.011
DTA.plot.it0.0450.0260.134
tls2.1640.9073.073