Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.12: CHECK report for ChIPsim on george2

This page was generated on 2013-10-09 09:37:35 -0700 (Wed, 09 Oct 2013).

Package 119/671HostnameOS / ArchBUILDCHECKBUILD BIN
ChIPsim 1.14.0
Peter Humburg
Snapshot Date: 2013-10-08 17:00:48 -0700 (Tue, 08 Oct 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/ChIPsim
Last Changed Rev: 75263 / Revision: 81334
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: ChIPsim
Version: 1.14.0
Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings ChIPsim_1.14.0.tar.gz
StartedAt: 2013-10-09 00:51:26 -0700 (Wed, 09 Oct 2013)
EndedAt: 2013-10-09 00:57:00 -0700 (Wed, 09 Oct 2013)
EllapsedTime: 333.4 seconds
RetCode: 0
Status:  OK 
CheckDir: ChIPsim.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/ChIPsim.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChIPsim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChIPsim’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChIPsim’ can be installed ... [28s/31s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [31s/34s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
bindDens2readDens 8.301  0.064   9.426
sampleReads       5.016  0.040   5.735
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ChIPsim.Rcheck/00install.out:

* installing *source* package ‘ChIPsim’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ChIPsim)

ChIPsim.Rcheck/ChIPsim-Ex.timings:

nameusersystemelapsed
ChIPsim-package0.0080.0000.010
bindDens2readDens8.3010.0649.426
decodeQuality0.0160.0040.019
defaultControl0.0080.0000.009
defaultErrorProb0.0120.0000.010
defaultFunctions0.0120.0000.013
defaultGenerator0.1440.0000.148
extractQuality0.0080.0000.008
feat2dens2.8880.0042.969
featureDensity0.0280.0000.055
makeFeatures0.1480.0000.173
placeFeatures0.2680.0120.335
pos2fastq0.1240.0200.176
readError0.0160.0040.023
reconcileFeatures0.2880.0000.351
sampleReads5.0160.0405.735
simChIP0.0160.0000.015
simpleNames0.0120.0000.012
stableFeature0.0080.0000.009
writeFASTQ0.0160.0000.015