Package: inSilicoMerging

Version: 1.2.3

Command: rm -rf inSilicoMerging.buildbin-libdir && mkdir inSilicoMerging.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=inSilicoMerging.buildbin-libdir inSilicoMerging_1.2.3.tar.gz >inSilicoMerging-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=inSilicoMerging.buildbin-libdir --install="check:inSilicoMerging-install.out" --force-multiarch --no-vignettes --timings inSilicoMerging_1.2.3.tar.gz && mv inSilicoMerging.buildbin-libdir/* inSilicoMerging.Rcheck/ && rmdir inSilicoMerging.buildbin-libdir

StartedAt: 2013-03-25 01:39:56 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:54:03 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 846.8 seconds

RetCode: 0

Status:  OK

CheckDir: inSilicoMerging.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/inSilicoMerging.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'inSilicoMerging/DESCRIPTION' ... OK
* this is package 'inSilicoMerging' version '1.2.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'inSilicoMerging' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
measureGenesOverlap            135.30   0.25  136.97
plotDendrogram                  23.82   0.28   25.57
measureSamplesOverlap           23.33   0.41   25.22
plotMDS                         19.69   0.28   21.40
measureAsymmetry                14.21   0.77   49.22
measureGenesMeanCorrCoef        14.30   0.43   16.19
measureSamplesMeanCorrCoef       9.46   0.28   11.20
plotRLE                          9.28   0.19   10.89
measureSignificantGenesOverlap   8.54   0.48   10.46
plotGeneWiseBoxPlot              4.65   0.28    6.38
plotGeneWiseDensity              3.82   0.22    5.48
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                                 user system elapsed
measureGenesOverlap            141.89   0.25  143.60
measureSamplesOverlap           29.49   0.32   31.23
plotMDS                         23.21   0.13   24.77
plotDendrogram                  22.76   0.25   24.44
measureAsymmetry                17.21   0.67   38.97
measureGenesMeanCorrCoef        14.71   0.32   16.49
measureSignificantGenesOverlap  10.24   0.51   12.15
measureSamplesMeanCorrCoef      10.46   0.28   12.19
plotRLE                          9.18   0.29   10.89
plotGeneWiseBoxPlot              4.37   0.27    6.06
plotGeneWiseDensity              3.76   0.09    5.31
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'inSilicoMerging_unit_tests.R'
 OK
** running tests for arch 'x64'
  Running 'inSilicoMerging_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'inSilicoMerging' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'inSilicoMerging.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'inSilicoMerging' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'inSilicoMerging' as inSilicoMerging_1.2.3.zip

* DONE (inSilicoMerging)