Package: imageHTS

Version: 1.8.0

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings imageHTS_1.8.0.tar.gz

StartedAt: 2013-03-25 02:20:13 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 02:26:20 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 366.6 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/imageHTS.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* this is package ‘imageHTS’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘imageHTS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
extractFeatures 39.130  0.252  39.976
countObjects    28.634  0.356  29.223
segmentWells    15.709  0.052  15.878
segmentYeastBF   9.721  0.032  10.033
getWellFeatures  6.209  0.012   6.332
zprime           5.052  0.000   5.082
fileHTS          4.749  0.004   6.284
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘imageHTS’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘imageHTS-introduction.Rnw’ 
** testing if installed package can be loaded

* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	28.634	0.356	29.223
extractFeatures	39.130	0.252	39.976
fileHTS	4.749	0.004	6.284
getImageConf	2.156	0.000	2.168
getUnames	4.760	0.004	4.766
getWellFeatures	6.209	0.012	6.332
highlightSegmentation	0	0	0
installCellPicker	3.884	0.008	3.896
makeCellHTS	0	0	0
parseDCF	0.000	0.004	0.005
parseImageConf	2.572	0.000	2.595
popCellPicker	2.600	0.000	2.604
prw2uname	0.004	0.000	0.005
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	15.709	0.052	15.878
segmentYeastBF	9.721	0.032	10.033
summarizeWells	0.000	0.000	0.001
zprime	5.052	0.000	5.082