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Package 271/609HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.36.2
Bioconductor Package Maintainer
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/graph
Last Changed Rev: 73142 / Revision: 74773
Last Changed Date: 2013-02-04 12:53:54 -0800 (Mon, 04 Feb 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ WARNINGS ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: graph
Version: 1.36.2
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings graph_1.36.2.tar.gz
StartedAt: 2013-03-25 01:57:10 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:58:49 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 98.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: graph.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/graph.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graph/DESCRIPTION’ ... OK
* this is package ‘graph’ version ‘1.36.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘graph’ can be installed ... WARNING
Found the following significant warnings:
  /home/biocbuild/bbs-2.11-bioc/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
See ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/graph.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
qrequire: ... may be used in an incorrect context
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘graph_unit_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/graph.Rcheck/00check.log’
for details.

graph.Rcheck/00install.out:

* installing *source* package ‘graph’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.11-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c graph.c -o graph.o
In file included from graph.c:4:0:
/home/biocbuild/bbs-2.11-bioc/R/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0" [-Wcpp]
gcc -std=gnu99 -shared -L/usr/local/lib64 -o graph.so graph.o -L/home/biocbuild/bbs-2.11-bioc/R/lib -lR
mv graph.so BioC_graph.so
installing to /loc/home/biocbuild/bbs-2.11-bioc/meat/graph.Rcheck/graph/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘GraphClass.Rnw’ 
   ‘MultiGraphClass.Rnw’ 
   ‘clusterGraph.Rnw’ 
   ‘graph.Rnw’ 
   ‘graphAttributes.Rnw’ 
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.0440.0000.045
IMCA0.2560.0080.380
MAPKsig0.1840.0000.272
MultiGraph-class0.1000.0040.107
acc-methods0.0160.0000.016
addEdge0.1080.0000.109
addNode0.0120.0000.011
adj-methods0.0040.0000.005
apoptosisGraph0.0280.0000.030
attrData-class0.0000.0000.002
aveNumEdges0.0120.0040.014
biocRepos0.0040.0000.013
boundary0.0080.0000.010
calcProb000
calcSumProb0.0040.0000.016
clearNode0.0080.0000.013
clusterGraph-class0.0080.0000.005
clusteringCoefficient-methods0.0080.0000.011
combineNodes0.0400.0000.047
distGraph-class0.0000.0000.021
duplicatedEdges000
edgeMatrix0.0200.0000.021
edgeSets0.040.000.06
edgeWeights0.0080.0000.010
fromGXL-methods0.4440.0200.558
graph-class0.0080.0000.008
graph2SparseM0.1400.0080.164
graphAM-class0.0240.0000.030
graphBAM-class0.1600.0040.176
graphExamples0.0040.0000.016
graphNEL-class0.0040.0000.006
inEdges0.0040.0000.004
leaves0.0200.0000.017
listEdges0.0080.0000.011
matrix2Graph0.0200.0080.033
mostEdges0.0280.0000.028
numNoEdges0.0040.0000.005
pancrCaIni0.0920.0000.101
randomEGraph0.0080.0000.009
randomGraph0.0040.0040.007
randomNodeGraph0.0040.0000.006
removeEdge0.0160.0000.015
removeNode0.0040.0000.005
renderInfo-class0.0080.0040.011
reverseEdgeDirections0.0080.0000.006
simpleEdge-class0.0000.0000.001
standardLabeling0.0720.0040.078
subGraph0.0040.0000.002
toDotR-methods0.0240.0040.027
ugraph0.0080.0000.009
validGraph0.0000.0000.002