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Package 376/609HostnameOS / ArchBUILDCHECKBUILD BIN
Mfuzz 2.16.1
Matthias Futschik
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/Mfuzz
Last Changed Rev: 73855 / Revision: 74773
Last Changed Date: 2013-03-01 10:54:40 -0800 (Fri, 01 Mar 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: Mfuzz
Version: 2.16.1
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Mfuzz_2.16.1.tar.gz
StartedAt: 2013-03-25 00:22:57 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:23:52 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 55.1 seconds
RetCode: 0
Status:  OK 
CheckDir: Mfuzz.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/Mfuzz.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Mfuzz/DESCRIPTION' ... OK
* this is package 'Mfuzz' version '2.16.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'Mfuzz' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Dmin: warning in mfuzz(eset, c = i, m = m): partial argument match of
  'c' to 'centers'
Mfuzzgui : objectBrowser2 : viewEnv: warning in ls(env = env, all =
  TRUE): partial argument match of 'env' to 'envir'
Mfuzzgui : objectBrowser2 : viewEnv: warning in ls(env = env, all =
  TRUE): partial argument match of 'all' to 'all.names'
mfuzz.plot2: warning in rgb(b = fancy.blue/255, g = fancy.green/255, r
  = fancy.red/255): partial argument match of 'r' to 'red'
mfuzz.plot2: warning in rgb(b = fancy.blue/255, g = fancy.green/255, r
  = fancy.red/255): partial argument match of 'g' to 'green'
mfuzz.plot2: warning in rgb(b = fancy.blue/255, g = fancy.green/255, r
  = fancy.red/255): partial argument match of 'b' to 'blue'
mfuzzColorBar: warning in rgb(b = fancy.blue/255, g = fancy.green/255,
  r = fancy.red/255): partial argument match of 'r' to 'red'
mfuzzColorBar: warning in rgb(b = fancy.blue/255, g = fancy.green/255,
  r = fancy.red/255): partial argument match of 'g' to 'green'
mfuzzColorBar: warning in rgb(b = fancy.blue/255, g = fancy.green/255,
  r = fancy.red/255): partial argument match of 'b' to 'blue'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/Mfuzz.Rcheck/00check.log'
for details.

Mfuzz.Rcheck/00install.out:

* installing *source* package 'Mfuzz' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Mfuzz.Rnw' 
** testing if installed package can be loaded

* DONE (Mfuzz)

Mfuzz.Rcheck/Mfuzz-Ex.timings:

nameusersystemelapsed
Dmin0.0010.0010.001
acore0.0000.0000.001
cselection0.0010.0000.002
fill.NA0.0010.0010.000
filter.NA0.0010.0000.000
filter.std0.8040.0290.834
kmeans20.0000.0000.001
kmeans2.plot000
mestimate0.0000.0000.001
mfuzz0.0010.0000.001
mfuzz.plot0.0010.0010.000
mfuzz.plot20.0030.0000.004
mfuzzColorBar0.0000.0010.000
overlap0.0010.0000.000
overlap.plot0.0010.0000.002
partcoef0.0010.0000.002
randomise0.0870.0060.094
standardise0.0010.0010.001
standardise20.0010.0000.001
top.count0.0010.0000.000