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Package 308/609HostnameOS / ArchBUILDCHECKBUILD BIN
IdMappingRetrieval 1.4.0
Alex Lisovich , Roger Day
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/IdMappingRetrieval
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: IdMappingRetrieval
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R --arch x86_64 CMD check --no-vignettes --timings --no-multiarch IdMappingRetrieval_1.4.0.tar.gz
StartedAt: 2013-03-25 00:04:22 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:07:40 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 198.2 seconds
RetCode: 0
Status:  OK 
CheckDir: IdMappingRetrieval.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/IdMappingRetrieval.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'IdMappingRetrieval/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IdMappingRetrieval' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'IdMappingRetrieval' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'IdMappingRetrieval.lyx'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/IdMappingRetrieval.Rcheck/00check.log'
for details.

IdMappingRetrieval.Rcheck/00install.out:

* installing *source* package 'IdMappingRetrieval' ...
** R
** demo
** inst
** preparing package for lazy loading
This is  ENVISIONQuery   1.6.0   2011-07-17 
Warning in setGenericS3.default(name, export = exportGeneric, envir = envir,  :
  Renamed the preexisting function getServices to getServices.default, which was defined in environment ENVISIONQuery.
** help
*** installing help indices
** building package indices
** installing vignettes
   'IdMappingRetrieval.Rnw' using 'latin-9' 
** testing if installed package can be loaded
This is  ENVISIONQuery   1.6.0   2011-07-17 

* DONE (IdMappingRetrieval)

IdMappingRetrieval.Rcheck/IdMappingRetrieval-Ex.timings:

nameusersystemelapsed
AnnotationDavid000
AnnotationEnsembl0.0000.0000.001
AnnotationEnsemblCsv0.0000.0000.001
AnnotationEnvision000
addServices.ServiceManager0.0420.0080.050
createSubmission.AnnotationNetAffx000
getArrayType.Annotation000
getArrayTypes.Annotation000
getCredentials.Annotation0.0000.0010.000
getDataFrame.Annotation0.0000.0000.001
getDataFrameList.ServiceManager0.0000.0000.001
getDefaultServices.ServiceManager0.0140.0030.018
getIdMap.Annotation000
getIdMapList.ServiceManager0.0000.0010.000
getProbesetList.AnnotationAffx0.0000.0000.001
getRoot.Annotation000
getServiceRoot.Annotation000
getServices.ServiceManager0.0140.0040.018
init.Annotation0.0000.0000.001
setCredentials.Annotation0.0010.0000.000
setCredentials.AnnotationAffx0.0000.0010.000
setOptions.Annotation000
setServices.ServiceManager0.0210.0060.027
subsetByColumn0.0010.0000.000