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Package 153/609HostnameOS / ArchBUILDCHECKBUILD BIN
DBChIP 1.2.0
Kun Liang
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/DBChIP
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: DBChIP
Version: 1.2.0
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings DBChIP_1.2.0.tar.gz
StartedAt: 2013-03-25 00:32:25 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:35:32 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 187.0 seconds
RetCode: 0
Status:  OK 
CheckDir: DBChIP.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/DBChIP.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DBChIP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DBChIP’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘DBChIP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
test.diff.binding.edgeR: possible error in estimateTagwiseDisp(d,
  prior.n = prior.n, verbose = FALSE): unused argument(s) (prior.n =
  prior.n)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
        user system elapsed
DBChIP 5.713  0.076   5.908
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/DBChIP.Rcheck/00check.log’
for details.

DBChIP.Rcheck/00install.out:

* installing *source* package ‘DBChIP’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘DBChIP.Rnw’ 
** testing if installed package can be loaded

* DONE (DBChIP)

DBChIP.Rcheck/DBChIP-Ex.timings:

nameusersystemelapsed
DBChIP-package4.0560.1564.285
DBChIP5.7130.0765.908
binding.site.list0.1480.2280.478
chip.data.list0.1960.0880.311
conds0.1960.0080.230
input.data.list0.2080.0120.239
load.data0.7960.1320.953
read.binding.site.list0.5640.2000.767