Package: CoCiteStats

Version: 1.30.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch CoCiteStats_1.30.0.tar.gz

StartedAt: 2013-03-24 23:08:15 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 23:13:22 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 306.7 seconds

RetCode: 0

Status:  OK

CheckDir: CoCiteStats.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/CoCiteStats.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'CoCiteStats/DESCRIPTION' ... OK
* this is package 'CoCiteStats' version '1.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'CoCiteStats' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
actorAdjTable            39.052  1.044  41.179
gene.geneslist.sig       34.325  2.195  37.906
twowayTable              25.743  0.567  26.653
twTStats                 24.711  0.566  25.535
gene.geneslist.statistic 24.253  0.755  25.532
gene.gene.statistic      24.265  0.616  25.313
paperLen                 23.832  0.573  24.596
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/CoCiteStats.Rcheck/00check.log'
for details.

* installing *source* package 'CoCiteStats' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (CoCiteStats)

name	user	system	elapsed
actorAdjTable	39.052	1.044	41.179
gene.gene.statistic	24.265	0.616	25.313
gene.geneslist.sig	34.325	2.195	37.906
gene.geneslist.statistic	24.253	0.755	25.532
paperLen	23.832	0.573	24.596
twTStats	24.711	0.566	25.535
twowayTable	25.743	0.567	26.653