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miRNATarget 0.99.1
Y-h. Taguchi
Snapshot Date: 2012-09-23 10:15:26 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/miRNATarget
Last Changed Rev: 2065 / Revision: 2159
Last Changed Date: 2012-05-11 14:31:35 -0700 (Fri, 11 May 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: miRNATarget
Version: 0.99.1
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_0.99.1.tar.gz
StartedAt: 2012-09-23 12:52:54 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 12:54:24 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 89.7 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-data-experiment/meat/miRNATarget.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '0.99.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'miRNATarget' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.1Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.10-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.

miRNATarget.Rcheck/00install.out:

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   'miRNATarget.Rnw' 
** testing if installed package can be loaded

* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0250.0040.029
HS_refseq_to_affy_hc_g1100.0100.0010.011
HS_refseq_to_affy_hg_focus0.0440.0020.047
HS_refseq_to_affy_hg_u133_plus_20.1580.0060.164
HS_refseq_to_affy_hg_u133a0.0920.0030.095
HS_refseq_to_affy_hg_u133a_20.0940.0030.097
HS_refseq_to_affy_hg_u133b0.0500.0020.052
HS_refseq_to_affy_hg_u95a0.0610.0030.064
HS_refseq_to_affy_hg_u95av20.0640.0020.066
HS_refseq_to_affy_hg_u95b0.0350.0020.037
HS_refseq_to_affy_hg_u95c0.0260.0020.029
HS_refseq_to_affy_hg_u95d0.0130.0010.014
HS_refseq_to_affy_hg_u95e0.0230.0010.025
HS_refseq_to_affy_huex_1_0_st_v22.7520.0662.820
HS_refseq_to_affy_hugene_1_0_st_v10.1870.0070.194
HS_refseq_to_affy_hugenefl0.0550.0020.057
HS_refseq_to_affy_u133_x3p0.3770.0100.388
HS_refseq_to_agilent_cgh_44b0.0300.0020.031
HS_refseq_to_agilent_wholegenome0.1110.0030.115
HS_refseq_to_canonical_transcript_stable_id0.1070.0030.110
HS_refseq_to_ccds0.0790.0030.081
HS_refseq_to_codelink0.0910.0020.094
HS_refseq_to_embl0.5070.0120.520
HS_refseq_to_ensembl_gene_id0.1050.0030.108
HS_refseq_to_ensembl_peptide_id0.1340.0040.137
HS_refseq_to_ensembl_transcript_id0.1400.0040.144
HS_refseq_to_entrezgene0.0980.0030.101
HS_refseq_to_hgnc_id0.0940.0030.097
HS_refseq_to_hgnc_symbol0.1030.0030.106
HS_refseq_to_hgnc_transcript_name0.1370.0030.141
HS_refseq_to_illumina_humanht_120.1290.0040.132
HS_refseq_to_illumina_humanwg_6_v10.1070.0030.110
HS_refseq_to_illumina_humanwg_6_v20.1030.0040.106
HS_refseq_to_illumina_humanwg_6_v30.1230.0030.126
HS_refseq_to_interpro0.2940.0070.302
HS_refseq_to_ipi0.1790.0050.185
HS_refseq_to_merops0.0050.0010.006
HS_refseq_to_pdb0.0660.0020.068
HS_refseq_to_pfam0.1050.0030.109
HS_refseq_to_phalanx_onearray0.1090.0040.112
HS_refseq_to_protein_id0.4760.0130.490
HS_refseq_to_refseq_dna0.0910.0030.094
HS_refseq_to_refseq_genomic0.0020.0000.002
HS_refseq_to_refseq_peptide0.1290.0040.131
HS_refseq_to_rfam0.0030.0010.004
HS_refseq_to_rfam_gene_name0.0010.0000.001
HS_refseq_to_rfam_transcript_name0.0010.0000.002
HS_refseq_to_smart0.0710.0030.074
HS_refseq_to_tigrfam0.0080.0010.009
HS_refseq_to_ucsc0.1250.0060.131
HS_refseq_to_unigene0.2180.0050.224
HS_refseq_to_uniprot_genename0.1420.0030.146
HS_refseq_to_wikigene_name0.1020.0030.105
MM_conv_id0.0050.0010.005
MM_refseq_to_affy_mg_u74a0.0400.0010.041
MM_refseq_to_affy_mg_u74av20.0390.0020.041
MM_refseq_to_affy_mg_u74b0.0290.0020.030
MM_refseq_to_affy_mg_u74bv20.0320.0020.034
MM_refseq_to_affy_mg_u74c0.0090.0010.010
MM_refseq_to_affy_mg_u74cv20.0140.0010.016
MM_refseq_to_affy_moe430a0.0880.0040.092
MM_refseq_to_affy_moe430b0.2190.0030.222
MM_refseq_to_affy_moex_1_0_st_v11.8730.0471.920
MM_refseq_to_affy_mogene_1_0_st_v10.1020.0040.106
MM_refseq_to_affy_mouse430_20.1100.0030.114
MM_refseq_to_affy_mouse430a_20.0760.0020.078
MM_refseq_to_affy_mu11ksuba0.0240.0010.025
MM_refseq_to_affy_mu11ksubb0.0160.0010.017
MM_refseq_to_agilent_wholegenome0.0920.0030.094
MM_refseq_to_canonical_transcript_stable_id0.0910.0030.094
MM_refseq_to_ccds0.0730.0030.076
MM_refseq_to_codelink0.0730.0030.076
MM_refseq_to_embl0.3310.0090.341
MM_refseq_to_ensembl_gene_id0.1630.0050.169
MM_refseq_to_ensembl_peptide_id0.0880.0050.092
MM_refseq_to_ensembl_transcript_id0.0910.0040.095
MM_refseq_to_entrezgene0.0870.0030.089
MM_refseq_to_fantom0.1180.0030.122
MM_refseq_to_illumina_mousewg_6_v10.2210.0040.225
MM_refseq_to_illumina_mousewg_6_v20.1140.0030.118
MM_refseq_to_interpro0.3390.0060.346
MM_refseq_to_ipi0.1150.0040.118
MM_refseq_to_merops0.0040.0010.005
MM_refseq_to_mgi_id0.0790.0020.082
MM_refseq_to_mgi_symbol0.0820.0020.085
MM_refseq_to_mgi_transcript_name0.0870.0030.090
MM_refseq_to_pdb0.0080.0010.009
MM_refseq_to_pfam0.0830.0020.085
MM_refseq_to_phalanx_onearray0.0710.0020.073
MM_refseq_to_protein_id0.2910.0080.299
MM_refseq_to_refseq_dna0.0680.0020.071
MM_refseq_to_refseq_peptide0.0890.0030.093
MM_refseq_to_rfam0.0020.0010.003
MM_refseq_to_rfam_gene_name0.0020.0010.003
MM_refseq_to_rfam_transcript_name0.0020.0010.002
MM_refseq_to_smart0.0530.0020.056
MM_refseq_to_tigrfam0.0060.0010.007
MM_refseq_to_ucsc0.0730.0030.076
MM_refseq_to_unigene0.1150.0040.119
MM_refseq_to_uniprot_genename0.1100.0040.114
MM_refseq_to_wikigene_name0.0870.0030.090
TBL23.4600.1613.623
TBL2_HS7.2740.3467.642
TBL2_MM3.1020.1723.286
conv_id0.0040.0010.006
id_conv0.0860.0030.089