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dsQTL 0.0.18
VJ Carey
Snapshot Date: 2012-09-23 10:15:26 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/dsQTL
Last Changed Rev: 2100 / Revision: 2159
Last Changed Date: 2012-07-14 01:32:21 -0700 (Sat, 14 Jul 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: dsQTL
Version: 0.0.18
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings dsQTL_0.0.18.tar.gz
StartedAt: 2012-09-23 12:40:58 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 12:47:46 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 408.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: dsQTL.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/dsQTL.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dsQTL/DESCRIPTION’ ... OK
* this is package ‘dsQTL’ version ‘0.0.18’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘dsQTL’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 275.4Mb
  sub-directories of 1Mb or more:
    data   261.4Mb
    parts   13.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getSNPlocs: no visible binding for global variable ‘ch2locs’
getSNPlocs: no visible binding for global variable ‘ch17locs’
* checking Rd files ... NOTE
prepare_Rd: dsQTL-package.Rd:53-54: Dropping empty section \seealso
prepare_Rd: dsQTL-package.Rd:55-56: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  ‘ndhs17’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
‘library’ or ‘require’ call not declared from: ‘GGtools’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 4 notes.
See
  ‘/loc/home/biocbuild/bbs-2.10-data-experiment/meat/dsQTL.Rcheck/00check.log’
for details.

dsQTL.Rcheck/00install.out:

* installing *source* package ‘dsQTL’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘dsq.Rnw’ 
** testing if installed package can be loaded

* DONE (dsQTL)