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Package 319/553HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.20.0
Gustavo H. Esteves
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/maigesPack
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: maigesPack
Version: 1.20.0
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings maigesPack_1.20.0.tar.gz
StartedAt: 2012-09-24 02:01:07 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 02:10:02 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 535.2 seconds
RetCode: 0
Status:  OK 
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/maigesPack.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maigesPack/DESCRIPTION’ ... OK
* this is package ‘maigesPack’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘maigesPack’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package ‘maigesPack’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c Minfo.c -o Minfo.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c bootstrapT.c -o bootstrapT.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c register.c -o register.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c robustCorr.c -o robustCorr.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.10-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c stats.c -o stats.o
stats.c: In function ‘stats_median_from_sorted_data’:
stats.c:80:22: warning: operation on ‘i’ may be undefined
gcc -std=gnu99 -shared -L/usr/local/lib64 -o maigesPack.so Minfo.o bootstrapT.o register.o robustCorr.o stats.o -L/home/biocbuild/bbs-2.10-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.10-bioc/meat/maigesPack.Rcheck/maigesPack/libs
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘show’ when loading ‘limma’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘maigesPack_tutorial.Rnw’ 
** testing if installed package can be loaded
Warning: replacing previous import ‘show’ when loading ‘limma’

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI0.0000.0040.004
activeMod2.9680.0122.980
activeModScoreHTML1.4000.0161.486
activeNet4.5440.0084.640
activeNetScoreHTML4.4800.0084.493
addGeneGrps000
addPaths000
bootstrapCor0.0480.0000.048
bootstrapMI0.2970.0000.293
bootstrapT0.0040.0000.004
boxplot-methods125.339 4.260130.487
bracketMethods0.2440.0120.256
calcA0.1440.1000.241
calcW0.3160.0800.397
classifyKNN0.2520.0120.275
classifyKNNsc0.3800.0000.378
classifyLDA1.3690.0041.372
classifyLDAsc2.4520.0082.461
classifySVM0.6760.0160.952
classifySVMsc1.1440.0121.158
coerce-methods0.1480.0240.175
compCorr000
createMaigesRaw0.3920.0000.391
deGenes2by2BootT0.5640.0080.572
deGenes2by2Ttest0.2880.0000.290
deGenes2by2Wilcox0.4360.0080.444
deGenesANOVA0.2440.0200.262
designANOVA0.1200.0040.126
dim-methods0.0640.0000.065
getLabels0.0640.0120.077
hierM1.6800.0441.715
hierMde0.5920.0120.606
image-methods4.8720.0084.884
kmeansM2.2290.0322.263
kmeansMde0.4960.0160.511
loadData000
normLoc2.9920.0123.007
normOLIN0.0640.0000.067
normRepLoess0.0680.0040.072
normScaleLimma158.550 2.904163.636
normScaleMarray73.404 0.95277.587
plot-methods 9.857 0.04410.392
plotGenePair0.1040.0080.118
print-methods0.1720.0080.182
relNet2TGF0.1480.0040.153
relNetworkB2.2200.0122.343
relNetworkM0.0960.0040.101
robustCorr000
selSpots0.3560.0200.378
show-methods0.1440.0160.171
somM2.3600.0562.640
somMde0.4080.0320.542
summarizeReplicates2.5120.0042.561
summary-methods0.1560.0080.161
tableClass1.0840.0041.090
tablesDE4.3130.0564.480