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Package 284/553HostnameOS / ArchBUILDCHECKBUILD BIN
inSilicoMerging 1.0.8
Jonatan Taminau , Stijn Meganck , Cosmin Lazar
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/inSilicoMerging
Last Changed Rev: 68834 / Revision: 69725
Last Changed Date: 2012-08-27 00:01:38 -0700 (Mon, 27 Aug 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: inSilicoMerging
Version: 1.0.8
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch inSilicoMerging_1.0.8.tar.gz
StartedAt: 2012-09-24 00:38:29 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 00:48:42 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 613.4 seconds
RetCode: 0
Status:  OK 
CheckDir: inSilicoMerging.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/inSilicoMerging.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'inSilicoMerging/DESCRIPTION' ... OK
* this is package 'inSilicoMerging' version '1.0.8'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'inSilicoMerging' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'inSilicoMerging_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

inSilicoMerging.Rcheck/00install.out:

* installing *source* package 'inSilicoMerging' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'inSilicoMerging.Rnw' 
** testing if installed package can be loaded

* DONE (inSilicoMerging)

inSilicoMerging.Rcheck/inSilicoMerging-Ex.timings:

nameusersystemelapsed
measureAsymmetry17.596 3.94973.917
measureGenesMeanCorrCoef24.092 2.74327.720
measureGenesOverlap191.485 16.769209.616
measureSamplesMeanCorrCoef13.863 2.88017.638
measureSamplesOverlap25.583 2.81929.283
measureSignificantGenesOverlap12.503 2.94716.424
merge1.3650.3032.448
plotDendrogram32.728 1.28422.837
plotGeneWiseBoxPlot6.6571.3088.812
plotGeneWiseDensity6.0841.1938.122
plotMDS17.089 1.34619.335
plotRLE 9.633 1.87012.393