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Package 212/553HostnameOS / ArchBUILDCHECKBUILD BIN
geneplotter 1.34.0
Bioconductor Package Maintainer
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/geneplotter
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: geneplotter
Version: 1.34.0
Command: rm -rf geneplotter.buildbin-libdir && mkdir geneplotter.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geneplotter.buildbin-libdir geneplotter_1.34.0.tar.gz >geneplotter-install.out 2>&1 && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD check --library=geneplotter.buildbin-libdir --install="check:geneplotter-install.out" --force-multiarch --no-vignettes --timings geneplotter_1.34.0.tar.gz && mv geneplotter.buildbin-libdir/* geneplotter.Rcheck/ && rmdir geneplotter.buildbin-libdir
StartedAt: 2012-09-24 00:45:50 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 00:48:32 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 161.7 seconds
RetCode: 0
Status:  OK  
CheckDir: geneplotter.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.10-bioc/meat/geneplotter.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'geneplotter/DESCRIPTION' ... OK
* this is package 'geneplotter' version '1.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'geneplotter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
amplicon.plot: warning in mget(featureNames(ESET), env = get(dname),
  ifnotfound = NA): partial argument match of 'env' to 'envir'
cColor: warning in mget(probes, env = probesToChrom(plotChroms),
  ifnotfound = NA): partial argument match of 'env' to 'envir'
getACGeneSyms: warning in mget(affys, env = geneSymbols(chrObj),
  ifnotfound = NA): partial argument match of 'env' to 'envir'
make.chromOrd: warning in mget(gnames, env = get(clname), ifnotfound =
  NA): partial argument match of 'env' to 'envir'
make.chromOrd: warning in mget(gnames, env = get(dname), ifnotfound =
  NA): partial argument match of 'env' to 'envir'
plotChr: warning in mget(labs, env = get(paste(senseObj$lib, "SYMBOL",
  sep = "")), ifnotfound = NA): partial argument match of 'env' to
  'envir'
plotChr: warning in mget(lines.at, env = get(paste(senseObj$lib,
  "CHRLOC", sep = "")), ifnotfound = NA): partial argument match of
  'env' to 'envir'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.10-bioc/meat/geneplotter.Rcheck/00check.log'
for details.

geneplotter.Rcheck/00install.out:


install for i386

* installing *source* package 'geneplotter' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'byChroms.Rnw' 
   'visualize.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'geneplotter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geneplotter' as geneplotter_1.34.0.zip

* DONE (geneplotter)