Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 174/553HostnameOS / ArchBUILDCHECKBUILD BIN
fabia 2.2.2
Sepp Hochreiter
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/fabia
Last Changed Rev: 68106 / Revision: 69725
Last Changed Date: 2012-07-31 08:20:04 -0700 (Tue, 31 Jul 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: fabia
Version: 2.2.2
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch fabia_2.2.2.tar.gz
StartedAt: 2012-09-24 00:02:03 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 00:03:21 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 77.5 seconds
RetCode: 0
Status:  OK 
CheckDir: fabia.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/fabia.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'fabia/DESCRIPTION' ... OK
* this is package 'fabia' version '2.2.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'fabia' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

fabia.Rcheck/00install.out:

* installing *source* package 'fabia' ...
checking for gcc... gcc -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -arch i386 -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include -I/usr/local/include   -g -O2 -Wall -pedantic -fPIC  -g -O2 -Wall -pedantic  -c fabiac.c -o fabiac.o
fabiac.c: In function 'spfabic':
fabiac.c:1587: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'samplesPerFeature':
fabiac.c:3109: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSamplesSpfabic':
fabiac.c:3343: warning: ordered comparison of pointer with integer zero
fabiac.c: In function 'readSpfabicResult':
fabiac.c:3563: warning: ordered comparison of pointer with integer zero
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fabia.so fabiac.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/fabia.Rcheck/fabia/libs/i386
** R
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'fabia'
** help
*** installing help indices
** building package indices
** installing vignettes
   'fabia.Rnw' 
** testing if installed package can be loaded

* DONE (fabia)

fabia.Rcheck/fabia-Ex.timings:

nameusersystemelapsed
estimateMode0.0620.0080.070
extractBic0.1520.0070.159
extractPlot0.4100.0330.446
fabi0.3210.0190.342
fabia0.1000.0060.106
fabiaDemo0.0010.0000.000
fabiaVersion0.0010.0010.001
fabiap0.1060.0050.111
fabias0.1330.0050.137
fabiasp0.6710.0420.719
makeFabiaData0.0560.0080.064
makeFabiaDataBlocks0.0560.0690.129
makeFabiaDataBlocksPos0.0580.0750.140
makeFabiaDataPos0.0770.0870.164
matrixImagePlot0.0870.1100.199
mfsc0.1320.0120.150
nmfdiv0.2140.1030.317
nmfeu0.1750.0710.256
nmfsc0.0710.0120.083
plot-methods0.7430.0220.766
plotBicluster0.1940.0140.210
projFunc0.0010.0010.002
projFuncPos0.0020.0010.002
readSamplesSpfabia000
samplesPerFeature0.0000.0000.001
show-methods0.1700.0090.179
showSelected-methods0.1460.0060.151
spfabia0.0680.0210.112
summary-methods0.1560.0050.163