Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 144/553HostnameOS / ArchBUILDCHECKBUILD BIN
deepSNV 1.2.3
Moritz Gerstung
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/deepSNV
Last Changed Rev: 65129 / Revision: 69725
Last Changed Date: 2012-04-13 01:11:10 -0700 (Fri, 13 Apr 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: deepSNV
Version: 1.2.3
Command: rm -rf deepSNV.buildbin-libdir && mkdir deepSNV.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=deepSNV.buildbin-libdir deepSNV_1.2.3.tar.gz
StartedAt: 2012-09-24 03:05:32 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 03:06:20 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 48.2 seconds
RetCode: 0
Status:  OK  
PackageFile: deepSNV_1.2.3.zip
PackageFileSize: 1.845 MiB

Command output


install for i386

* installing *source* package 'deepSNV' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++  -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/include"      -O2 -Wall  -mtune=core2 -c bam2R.cpp -o bam2R.o
In file included from E:/biocbld/BBS-2˜1.10-/R/include/R.h:44:0,
                 from bam2R.cpp:11:
E:/biocbld/BBS-2˜1.10-/R/include/R_ext/RS.h:43:0: warning: "ERROR" redefined [enabled by default]
c:\rtools216\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/wingdi.h:70:0: note: this is the location of the previous definition
bam2R.cpp: In function 'int bam2R(char**, char**, int*, int*, int*, int*, int*, int*, int*)':
bam2R.cpp:85:6: warning: unused variable 'c' [-Wunused-variable]
g++ -shared -s -static-libgcc -o deepSNV.dll tmp.def bam2R.o E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/i386/libbam.a E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/i386/libbam.a E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/i386/libbcf.a E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/i386/libtabix.a -lws2_32 -LE:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LE:/biocbld/BBS-2~1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/deepSNV.buildbin-libdir/deepSNV/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'deepSNV.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'deepSNV' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m64 -I"E:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2~1.10-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE   -I"E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c bam2R.cpp -o bam2R.o
In file included from E:/biocbld/BBS-2˜1.10-/R/include/R.h:44:0,
                 from bam2R.cpp:11:
E:/biocbld/BBS-2˜1.10-/R/include/R_ext/RS.h:43:0: warning: "ERROR" redefined [enabled by default]
c:\rtools216\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/wingdi.h:70:0: note: this is the location of the previous definition
bam2R.cpp: In function 'int bam2R(char**, char**, int*, int*, int*, int*, int*, int*, int*)':
bam2R.cpp:85:6: warning: unused variable 'c' [-Wunused-variable]
g++ -m64 -shared -s -static-libgcc -o deepSNV.dll tmp.def bam2R.o E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/x64/libbam.a E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/x64/libbam.a E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/x64/libbcf.a E:/biocbld/bbs-2.10-bioc/R/library/Rsamtools/usrlib/x64/libtabix.a -lws2_32 -LE:/biocbld/bbs-2.10-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2~1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/deepSNV.buildbin-libdir/deepSNV/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'deepSNV' as deepSNV_1.2.3.zip

* DONE (deepSNV)