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Package 90/553HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.20.0
Joseph Barry
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/cellHTS2
Last Changed Rev: 64678 / Revision: 69725
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: cellHTS2
Version: 2.20.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cellHTS2_2.20.0.tar.gz
StartedAt: 2012-09-23 23:35:22 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 23:41:34 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 372.4 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/cellHTS2.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.7Mb
  sub-directories of 1Mb or more:
    KcViab   2.0Mb
    doc      1.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  'GO.db' 'KEGG.db'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.10-bioc/meat/cellHTS2.Rcheck/00check.log'
for details.

cellHTS2.Rcheck/00install.out:

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'lines' from package 'graphics' in package 'cellHTS2'
** help
*** installing help indices
** building package indices
** installing vignettes
   'cellhts2.Rnw' 
   'cellhts2Complete.Rnw' 
   'twoChannels.Rnw' 
   'twoWay.Rnw' 
** testing if installed package can be loaded

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore5.6550.0285.685
ROC-class0.5570.0100.567
ROC1.3610.0101.374
annotate1.4810.0091.490
bdgpbiomart0.2830.0070.290
buildCellHTS20.3280.0010.329
cellHTS-class3.0090.0353.075
configurationAsScreenPlot3.7320.0363.769
configure1.5300.0061.536
convertOldCellHTS1.3360.0041.341
convertWellCoordinates0.0000.0000.001
data-KcViab0.3060.0080.315
data-KcViabSmall0.0220.0010.024
data-dualCh0.0250.0020.027
data-oldKcViabSmall0.0210.0010.023
getAlphaNumeric0.0000.0000.001
getDynamicRange1.0070.0061.014
getEnVisionRawData0.0270.0040.031
getMeasureRepAgreement0.7010.0040.704
getTopTable1.6030.0081.612
getZfactor0.6720.0040.678
imageScreen1.9590.0171.976
normalizePlates2.6150.0092.672
oneRowPerId0.0210.0000.021
plotSpatialEffects5.2470.0125.258
readHTAnalystData1.9660.0061.975
readPlateList1.5270.0121.543
rsa1.5200.0061.526
scoreReplicates1.5850.0061.591
scores2calls1.3160.0091.325
setSettings0.0050.0030.008
spatialNormalization2.4010.0232.426
summarizeChannels2.6620.0152.677
summarizeReplicates1.1540.0051.158
templateDescriptionFile0.0010.0010.003
updateCellHTS0.3200.0020.323
write.tabdel0.1360.0030.139
writeReport0.0230.0020.025
writeTab0.0360.0030.041