Package: categoryCompare

Version: 1.0.2

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch categoryCompare_1.0.2.tar.gz

StartedAt: 2012-09-23 23:33:53 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 23:38:14 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 261.9 seconds

RetCode: 0

Status:  OK

CheckDir: categoryCompare.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/categoryCompare.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'categoryCompare/DESCRIPTION' ... OK
* this is package 'categoryCompare' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'categoryCompare' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'categoryCompare' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'categoryCompare_vignette.Rnw' 
** testing if installed package can be loaded

* DONE (categoryCompare)

name	user	system	elapsed
GENccEnrichResult-class	1.183	0.030	1.212
HyperGParamsCC-class	0.001	0.001	0.002
HyperGResultCC-class	0.001	0.000	0.001
breakEdges-methods	1.573	0.031	1.605
breakEdges	0	0	0
ccCompare	2.727	0.059	2.792
ccCompareCollection-class	0.001	0.000	0.002
ccCompareResult-class	0.001	0.001	0.001
ccData	1.350	0.027	1.380
ccEnrich	1.100	0.028	1.133
ccEnrichCollection-class	2.995	0.090	3.091
ccEnrichResult-class	6.313	0.160	6.480
ccGeneList-class	0.955	0.023	0.980
ccOptions-class	0.027	0.001	0.028
ccOutCyt-methods	0	0	0
ccSigList-class	0.001	0.000	0.001
cytOutData-methods	0.001	0.000	0.000
cytOutNodes-methods	0.001	0.000	0.001
hyperGTestCC	1.230	0.047	1.279
mergeLists-methods	1.434	0.040	1.476
mergedData-class	1.110	0.028	1.141
minCount	3.958	0.111	4.073
minNodes	0.000	0.001	0.001
pvalueType	5.543	0.138	5.690
show-methods	0	0	0