Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 87/553HostnameOS / ArchBUILDCHECKBUILD BIN
categoryCompare 1.0.2
Robert M. Flight
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/categoryCompare
Last Changed Rev: 68132 / Revision: 69725
Last Changed Date: 2012-08-01 05:18:09 -0700 (Wed, 01 Aug 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: categoryCompare
Version: 1.0.2
Command: /home/biocbuild/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings categoryCompare_1.0.2.tar.gz
StartedAt: 2012-09-23 23:52:42 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 23:56:45 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 243.3 seconds
RetCode: 0
Status:  OK 
CheckDir: categoryCompare.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/categoryCompare.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘categoryCompare/DESCRIPTION’ ... OK
* this is package ‘categoryCompare’ version ‘1.0.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘categoryCompare’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

categoryCompare.Rcheck/00install.out:

* installing *source* package ‘categoryCompare’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘categoryCompare_vignette.Rnw’ 
** testing if installed package can be loaded

* DONE (categoryCompare)

categoryCompare.Rcheck/categoryCompare-Ex.timings:

nameusersystemelapsed
GENccEnrichResult-class0.9760.0201.010
HyperGParamsCC-class0.0000.0000.001
HyperGResultCC-class0.0040.0000.001
breakEdges-methods1.8120.0361.885
breakEdges000
ccCompare3.7280.0523.786
ccCompareCollection-class0.0000.0000.001
ccCompareResult-class000
ccData0.9890.0161.003
ccEnrich0.6120.0120.623
ccEnrichCollection-class2.5800.0442.703
ccEnrichResult-class7.3480.0607.616
ccGeneList-class0.7840.0240.854
ccOptions-class0.0720.0000.077
ccOutCyt-methods000
ccSigList-class0.0000.0000.001
cytOutData-methods000
cytOutNodes-methods000
hyperGTestCC1.0080.0161.025
mergeLists-methods0.8040.0280.835
mergedData-class0.7320.0441.087
minCount5.2850.0405.497
minNodes000
pvalueType4.7920.0365.032
show-methods000