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Package 147/553HostnameOS / ArchBUILDCHECKBUILD BIN
DESeq 1.8.3
Simon Anders
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/DESeq
Last Changed Rev: 66208 / Revision: 69725
Last Changed Date: 2012-05-26 02:24:37 -0700 (Sat, 26 May 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: DESeq
Version: 1.8.3
Command: rm -rf DESeq.buildbin-libdir && mkdir DESeq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq_1.8.3.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R DESeq.buildbin-libdir
StartedAt: 2012-09-24 02:13:55 -0700 (Mon, 24 Sep 2012)
EndedAt: 2012-09-24 02:14:14 -0700 (Mon, 24 Sep 2012)
EllapsedTime: 19.3 seconds
RetCode: 0
Status:  OK 
PackageFile: DESeq_1.8.3.tgz
PackageFileSize: 1.954 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DESeq.buildbin-libdir DESeq_1.8.3.tar.gz'
>>>>>>> 

* installing *source* package 'DESeq' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26: warning: unused variable 'esttotalperlength'
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DESeq.so pval.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'DESeq.Rnw' 
** testing if installed package can be loaded

* DONE (DESeq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DESeq.buildbin-libdir/DESeq/libs/i386/DESeq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "DESeq.buildbin-libdir/DESeq/libs/i386/DESeq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "DESeq.buildbin-libdir/DESeq/libs/i386/DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "DESeq.buildbin-libdir/DESeq/libs/i386/DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "DESeq.buildbin-libdir/DESeq/libs/i386/DESeq.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=DESeq.buildbin-libdir --libs-only DESeq_1.8.3.tar.gz'
>>>>>>> 

* installing *source* package 'DESeq' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c pval.c -o pval.o
pval.c: In function 'add_from_both_sides':
pval.c:26: warning: unused variable 'esttotalperlength'
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o DESeq.so pval.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/DESeq.buildbin-libdir/DESeq/libs/x86_64

* DONE (DESeq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DESeq.buildbin-libdir/DESeq/libs/x86_64/DESeq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "DESeq.buildbin-libdir/DESeq/libs/x86_64/DESeq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "DESeq.buildbin-libdir/DESeq/libs/x86_64/DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "DESeq.buildbin-libdir/DESeq/libs/x86_64/DESeq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "DESeq.buildbin-libdir/DESeq/libs/x86_64/DESeq.so"