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Package 70/553HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.14.3
Marcus Dittrich
Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/BioNet
Last Changed Rev: 67266 / Revision: 69725
Last Changed Date: 2012-07-04 04:38:19 -0700 (Wed, 04 Jul 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: BioNet
Version: 1.14.3
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BioNet_1.14.3.tar.gz
StartedAt: 2012-09-23 23:28:03 -0700 (Sun, 23 Sep 2012)
EndedAt: 2012-09-23 23:32:26 -0700 (Sun, 23 Sep 2012)
EllapsedTime: 263.6 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.10-bioc/meat/BioNet.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'BioNet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BioNet' version '1.14.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'BioNet' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc       1.4Mb
    extdata   3.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.10-bioc/meat/BioNet.Rcheck/00check.log'
for details.

BioNet.Rcheck/00install.out:

* installing *source* package 'BioNet' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals0.7080.0580.766
bumOptim0.9520.2351.191
compareNetworks1.6670.0941.762
consensusScores0.4030.0060.410
fbum000
fbumLL1.0110.2551.268
fdrThreshold1.0660.2661.337
fitBumModel1.5230.2741.801
getCompScores3.8570.2114.089
getEdgeList1.3640.0371.402
hist.bum1.1320.2621.406
largestComp12.554 1.70014.335
largestScoreComp14.371 1.78216.238
loadNetwork.sif0.0000.0000.001
makeNetwork0.0120.0000.013
mapByVar0.0000.0000.001
permutateNodes17.247 1.97119.303
piUpper1.2280.3581.612
plot.bum1.4710.2951.783
plot3dModule5.3600.8136.197
plotLLSurface0.7810.1651.004
plotModule4.3330.7675.133
print.bum1.0970.2891.398
pvaluesExample0.0100.0010.012
readHeinzGraph0.4210.0100.431
readHeinzTree0.4140.0070.420
resamplingPvalues6.8200.1737.004
rmSelfLoops0.0070.0010.008
runFastHeinz11.689 1.30613.033
save3dModule3.3160.7644.106
saveNetwork1.6570.0831.747
scanFDR1.2860.4341.738
scoreFunction1.2230.5271.766
scoreNodes4.6290.9625.631
scoreOffset0.9130.3001.225
sortedEdgeList5.3530.0475.404
subNetwork0.0380.0030.040
summary.bum1.0680.3421.423
writeHeinz3.5640.6854.283
writeHeinzEdges5.6660.7936.465
writeHeinzNodes3.1720.5963.782