Package: Agi4x44PreProcess

Version: 1.16.0

Command: rm -rf Agi4x44PreProcess.buildbin-libdir && mkdir Agi4x44PreProcess.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Agi4x44PreProcess.buildbin-libdir Agi4x44PreProcess_1.16.0.tar.gz >Agi4x44PreProcess-install.out 2>&1 && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD check --library=Agi4x44PreProcess.buildbin-libdir --install="check:Agi4x44PreProcess-install.out" --force-multiarch --no-vignettes --timings Agi4x44PreProcess_1.16.0.tar.gz && mv Agi4x44PreProcess.buildbin-libdir/* Agi4x44PreProcess.Rcheck/ && rmdir Agi4x44PreProcess.buildbin-libdir

StartedAt: 2012-09-23 23:32:58 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 23:35:39 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 160.9 seconds

RetCode: 0

Status:  OK

CheckDir: Agi4x44PreProcess.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.10-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
HeatMap: warning in heatmap.2(DD.s, labCol = samples, labRow = names,
  scale = "none", col = rbg, margin = c(10, 10), tracecol = "cyan"):
  partial argument match of 'margin' to 'margins'
filter.probes: warning in .packages(all = TRUE): partial argument match
  of 'all' to 'all.available'
genes.rpt.agi: warning in ensembl.htmlpage(PROBE_ID, probe.chr,
  filename, annotation.package, title, table.head = head, table.center
  = TRUE, other = list(unlist(GENE_ID), unlist(gene.sym),
  unlist(probe.chr))): partial argument match of 'other' to
  'othernames'
write.eset: warning in .packages(all = TRUE): partial argument match of
  'all' to 'all.available'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.10-bioc/meat/Agi4x44PreProcess.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'Agi4x44PreProcess' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Agi4x44PreProcess.Rnw' using 'latin1' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'Agi4x44PreProcess' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Agi4x44PreProcess' as Agi4x44PreProcess_1.16.0.zip

* DONE (Agi4x44PreProcess)