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Package 211/233HostnameOS / ArchBUILDCHECKBUILD BIN
snapCGH 1.6.0
John Marioni
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 27709 / Revision: 30966
Last Changed Date: 2007-10-02 17:41:09 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: snapCGH
Version: 1.6.0
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD INSTALL --build --library=snapCGH.buildbin-libdir snapCGH_1.6.0.tar.gz
StartedAt: 2008-04-09 19:38:26 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 19:38:53 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 26.9 seconds
RetCode: 0
Status: OK
PackageFileSize: 1.181 MiB

Command output

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/snapCGH.buildbin-libdir

Using auto-selected zip options ' snapCGH-HELP=ziponly'

---------- Making package snapCGH ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making optimizer.d from optimizer.c
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.1-bioc/R/include     -O3 -Wall  -c optimizer.c -o optimizer.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.1-bioc/R/include  -i snapCGH_res.rc -o snapCGH_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o snapCGH.dll snapCGH.def optimizer.o snapCGH_res.o  -LE:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
Note: unmatched right brace in 'SegList' on or after line 30
Note: unmatched right brace in 'SegList.Rd' on or after line 30
Note: unmatched right brace in '' on or after line 18
Note: unmatched right brace in '' on or after line 18
Note: unmatched right brace in '' on or after line 9
Note: unmatched right brace in '' on or after line 9
Note: unmatched right brace in 'processCGH' on or after line 44
Note: unmatched right brace in 'processCGH.Rd' on or after line 44
 >>> Building/Updating help pages for package 'snapCGH'
     Formats: text html latex example chm 
  IDProbes                          text    html    latex           chm
  LargeDataObject                   text    html    latex   example chm
  SegList                           text    html    latex           chm
  Viterbi.five                      text    html    latex           chm
  Viterbi.four                      text    html    latex           chm
  Viterbi.three                     text    html    latex           chm
  Viterbi.two                       text    html    latex           chm
  cbind                             text    html    latex           chm
  chrominfo.Mb                      text    html    latex           chm
  compareSegmentations              text    html    latex           chm
  convert.output                    text    html    latex   example chm
  dim                               text    html    latex   example chm
  dimnames                          text    html    latex           chm
  filter                            text    html    latex           chm
  find.param.five                   text    html    latex           chm
  find.param.four                   text    html    latex           chm                    text    html    latex           chm
  find.param.three                  text    html    latex           chm
  find.param.two                    text    html    latex           chm
  findBreakPoints                   text    html    latex           chm
  fit.model                         text    html    latex           chm
  genomePlot                        text    html    latex   example chm
  heatmapGenome                     text    html    latex   example chm
  imputeMissingValues               text    html    latex           chm
  log2ratios                        text    html    latex           chm
  mergeStates                       text    html    latex           chm   text    html    latex           chm       text    html    latex           chm
  nudSegmentation                   text    html    latex           chm
  plotSegmentedGenome               text    html    latex   example chm
  processCGH                        text    html    latex           chm
  read.clonesinfo                   text    html    latex           chm
  readPositionalInfo                text    html    latex           chm
  removeByWeights                   text    html    latex           chm
  runBioHMM                         text    html    latex           chm
  runDNAcopy                        text    html    latex           chm
  runGLAD                           text    html    latex           chm
  runHMM                            text    html    latex           chm
  runPicard                         text    html    latex           chm
  sim.structure                     text    html    latex   example chm
  zero.length.distr.non.tiled       text    html    latex           chm
  zero.length.distr.tiled           text    html    latex           chm
  zoomChromosome                    text    html    latex           chm
  zoomGenome                        text    html    latex           chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.336\snapCGH\chm\snapCGH.chm

Compile time: 0 minutes, 0 seconds

45	Topics

178	Local links

0	Internet links

1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.336\snapCGH\chm\snapCGH.chm, 66,814 bytes

Compression decreased file by 86,660 bytes.

  preparing package snapCGH for lazy loading
Loading required package: limma
Loading required package: tilingArray
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Loading required package: sandwich
Loading required package: vsn
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: pixmap
Loading required package: DNAcopy

Attaching package: 'DNAcopy'

	The following object(s) are masked from package:tilingArray :


Loading required package: GLAD
Loading required package: aws
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: cluster
Loading required package: aCGH
Loading required package: multtest
Loading required package: sma

Attaching package: 'aCGH'

	The following object(s) are masked from package:stats :


  adding MD5 sums

packaged installation of package 'snapCGH' as
* DONE (snapCGH)